Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 194 / 3e-61 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 184 / 5e-57 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 181 / 2e-56 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 179 / 3e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 177 / 1e-54 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G52340 177 / 3e-54 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 175 / 4e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 171 / 3e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 169 / 3e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 168 / 1e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021312 [exp] 229 / 9e-75 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 228 / 2e-74 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 226 / 1e-73 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 226 / 2e-73 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 223 / 2e-72 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 223 / 2e-72 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 221 / 1e-71 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 221 / 1e-71 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 221 / 2e-71 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206900 [exp] 296 / 5e-101 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 240 / 3e-79 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 227 / 5e-74 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 223 / 2e-72 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 221 / 9e-72 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 221 / 1e-71 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 220 / 3e-71 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 214 / 7e-69 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 214 / 1e-68 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 209 / 6e-67 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10022760 pacid=23178679 polypeptide=Lus10022760 locus=Lus10022760.g ID=Lus10022760.BGIv1.0 annot-version=v1.0 ATGTCCAGATTGCAAGACAAAGTAGCCATCATCACCGGCGGAGCCAGCGGGATCGGAGCCGCCACTGTCGAGCTATTCCACCAACAAGGAGCCAAGGTCG TCATCGCTGACGTCCAAGACAGCCTAGGCCAAGCCATTGCCGGCAAGCTTCGCAACGCCACCTACATCCACTGTGACGTGTCCAGGGAGGCCGAGGTGGC ACACCTGGTGAACGCCACGGTGGCGAAATTTGGGAAGCTGGACATAATGTACTGCAACGCTGGCATATTGGACGGTGCGCTTAGAAGGAGCATAGTGGAC GCCTCTAAATCTGATATGGACCGTCTGATCGAGGTGAATCTCGTGGGGGCGTTTCTGAGTGCCAAGCACGCTGCTAGGGTTATGATCCCGAAGCGAAAGG GAAACATTCTATTCACAACGAGTGCTTGTACCGCTATAGGCGGGTTGGAGAGCCACGCCTATGCGGTGACCAAGTATGGAATTCTTGGGCTGGCCCGGAA TCTTACCGGTGAGTTGGGCCCGCATGAGATTCGGGTCAATTGTATCTCTCCATTCGGGTTGCTGACCAGTCAGGGTGCAGATTTAAGCGAGCATTTGAGC GCGATGGGAAACTTGAAGGGGAAGATTTTAAAGGCGATTGACATTGCGAGGGCTGCGTTGTTTTTGGTGAGTGACGATGCGCAGTATGTGAGCGGGGTTA ACCTTTTGGTGGATGGAGGGTTCAGTACGATCAATCCGACATTTCTCAGGGCAATCGGTGTGAACAAGATCTTATATTATTCAAATTTAGGCCAACACTA A
AA sequence Show only first row Show all	>Lus10022760 pacid=23178679 polypeptide=Lus10022760 locus=Lus10022760.g ID=Lus10022760.BGIv1.0 annot-version=v1.0 MSRLQDKVAIITGGASGIGAATVELFHQQGAKVVIADVQDSLGQAIAGKLRNATYIHCDVSREAEVAHLVNATVAKFGKLDIMYCNAGILDGALRRSIVD ASKSDMDRLIEVNLVGAFLSAKHAARVMIPKRKGNILFTTSACTAIGGLESHAYAVTKYGILGLARNLTGELGPHEIRVNCISPFGLLTSQGADLSEHLS AMGNLKGKILKAIDIARAALFLVSDDAQYVSGVNLLVDGGFSTINPTFLRAIGVNKILYYSNLGQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	0	1
					Lus10024490 [exp]	1.0	0.9596
AT4G32900			Peptidyl-tRNA hydrolase II (PT...		Lus10011608 [exp]	2.0	0.9563
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025104 [exp]	2.4	0.9553
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	3.5	0.9272
					Lus10029087 [exp]	3.9	0.9221
AT2G48060			unknown protein		Lus10029968 [exp]	3.9	0.8525
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016495 [exp]	5.7	0.9007
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	8.9	0.8494
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10042394 [exp]	10.2	0.9090
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10027584 [exp]	10.4	0.8534

Compare expression of checked genes

Lus10022760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.