Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13040 118 / 2e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011836 [exp] 281 / 3e-96 AT4G13040 149 / 4e-45 Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246100 [exp] 168 / 3e-52 AT4G13040 158 / 4e-48 Integrase-type DNA-binding superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10022769 pacid=23160033 polypeptide=Lus10022769 locus=Lus10022769.g ID=Lus10022769.BGIv1.0 annot-version=v1.0 ATGGTGAGCTTGCGAAGACGGAGGCTGTTGGGACTATGCAGTGGAGGAAGTTCATTTGTGACTCCACTTCCTCAAACACTTACACCTGTAACCTCGATTC CGAGTGCCAAGTCTTCTGTCAATGTCCAATCCGTTTCGTCTGGTGAAGCCAATCTATCAGATGAGAGAATTTTCGCCATATGTGGACCGGATTCGTCAAA TGCATCGCCTCATGATTCACCCAAGGAGGAGCAGCAGTCTCATGCCTACCCAGACCAACCGATTAAGAGGCGGAAGCGACACAGAAGGAAGCACGTTCAG AACCAAGAACCATGTGTGATGCGTGGTGTTTACTTCAAGAACATGAAGTGGCAAGCAGCAATCAAAGTTGACAAGAAACAGATCCACTTGGGGACCGTCG GTTCTCAGGAAGAAGCTGCTCGTCTCTACGACAGGGCTGCATTCATGTGTGGGAGGGAGCCGAACTTCGAGATCCCAGAGGAGGAGAAGGAAGAGCTTAG GAAATTCAAGTGGGAGGAGTTCTTAGCCATTACTCGAAGCGCAATCAACAACAAGAAGCACAAGAGAGGCATGAGAAGGATCGGAGGAGGTGTCGTGTTG CAGAAGATATCGTCGGAGGCGAATGGTGATCCAATGCAGGTTGGTCTGTCTGGTTCAGAAGAAGGGGAAGCAGATTCATCAGCCACTTGA
AA sequence Show only first row Show all	>Lus10022769 pacid=23160033 polypeptide=Lus10022769 locus=Lus10022769.g ID=Lus10022769.BGIv1.0 annot-version=v1.0 MVSLRRRRLLGLCSGGSSFVTPLPQTLTPVTSIPSAKSSVNVQSVSSGEANLSDERIFAICGPDSSNASPHDSPKEEQQSHAYPDQPIKRRKRHRRKHVQ NQEPCVMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAARLYDRAAFMCGREPNFEIPEEEKEELRKFKWEEFLAITRSAINNKKHKRGMRRIGGGVVL QKISSEANGDPMQVGLSGSEEGEADSSAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022769 [exp]	0	1
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10014128 [exp]	4.8	0.7326
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10007632 [exp]	9.3	0.7126
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	16.6	0.6867
AT1G02475			Polyketide cyclase/dehydrase a...		Lus10009002 [exp]	17.0	0.6556
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10034068 [exp]	19.8	0.7001
AT2G43950		OEP37, ATOEP37	ARABIDOPSIS CHLOROPLAST OUTER ...		Lus10013621 [exp]	22.6	0.6602
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10024139 [exp]	25.7	0.7122
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	29.7	0.7062
AT4G36550			ARM repeat superfamily protein...		Lus10028307 [exp]	30.5	0.6925
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	34.9	0.7016

Compare expression of checked genes

Lus10022769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.