Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 268 / 4e-75 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 218 / 4e-58 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G59218 142 / 3e-34 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 142 / 3e-34 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46530 141 / 3e-34 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 136 / 2e-32 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 136 / 2e-32 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 134 / 6e-32 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 134 / 1e-31 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 133 / 2e-31 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022900 [exp] 901 / 0 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 900 / 0 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10003571 [exp] 860 / 0 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 837 / 0 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 822 / 0 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10011856 [exp] 365 / 4e-120 AT3G14460 76 / 5e-16 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011855 [exp] 285 / 2e-90 AT3G14470 52 / 2e-08 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 296 / 6e-84 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 289 / 6e-82 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123500 [exp] 519 / 5e-169 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 509 / 2e-165 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 505 / 2e-163 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 494 / 1e-159 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 491 / 1e-158 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 465 / 7e-149 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 462 / 4e-147 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 459 / 1e-145 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.008G212200 [exp] 449 / 8e-143 AT3G14470 392 / 8e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 439 / 1e-139 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10022792 pacid=23159991 polypeptide=Lus10022792 locus=Lus10022792.g ID=Lus10022792.BGIv1.0 annot-version=v1.0 ATGGTTGCTCAGATTGTATCCCAAATCCTGCAGGAGCTGGGTTCGATCCTGACAGAAGAAGTCAAGCGAAGAGGGAAGCTGGTCGTAGGTGCGGAGAAAG ATGTGAAGAAGCTGAAATCCACTTTCTCCGCCATTGAATCTCTGTTGCTGGATGCTGAAGAGAGACAGCTTCGCGACGAAGCTGTCAGGGACTGGGTGAC GAAGCTTAACAACGTCTGCTTCGAGATCGACGATGTGCTGGACGAGTGGAGGACCGCGATCCTCAAGCGCAAGATCGAGGATGATGACGATGATGATGAT GTTGGTTATGGTTGGTTGGAGCTGAAGCTGCTCGAAATTTCGAATGTGCTTAACCGGGTATGTCCGTTTTTACCCGGTTACTGTTTCTCTGTTTCGGAGA TCGGTCTTCGATATGATATTGCTTCTAGGATCAAGGAACTGTATGAAGATCTTGATCATATAGACAAAGATAAGAACATGTTTCAGTTTAGTGCTAGTGA ATCTAGTGCTAAGCCTCGGAGTTTGGAAACTAGCCAGAATATCGACTTGTCGAATGTCAAAGGCAGGGAAGTAGAGGTGAAGGTGTTGAGGGAGAAGTTA GTGCATCGAGATACTAGTGCGAAAAATGTCCAAAGTATCTCGATCCAGGGTACCGGCGGACTTGGGAAGACGACATTGGCCAAACTACTCTACAACGACG AGGTTGCGAAAACTTGTTTCGACAAGAGAATTTGGATTTGTGTGTCCGACACGTTTGATCAAGCAACGATTGCTAAATCCATCCTGGAATCTGTCTCCGG TGTTCGTCAAAAAGATAAGACCTTGTCAAAGAGGCTGGAGGAGATACATGAGACGATCCGGGGTAAGAGGTTTCTTCTTGTTCTCGATGATGTGTGGGAA CATAGCAGGAATTGCTGGGAAGAACTGTTGAGCTCTGTTTCCTCCGGTTCACCCGGAAGCAAAATCTTGGTGACCACGCGTAAAGGAGAGGTTTCTAATG CACTGGATTGCGCCCAGAACAATGTGATCCTTATAGGAAAGTTGTCGGAGGATGCATGTCGAGTCCTTTTTGCCGAAATTGCGTTCCACGGATGGACTGC GGAGGAGCGAGAGCGCGTGGAAGATGTATGCGAAGGGATGGCGAAGAAATGCTGCGGTTCGCCTCTAGCGGTGAAAGTGTTGGCAGGGGTCCTGCGGACC AAGAAAAGCCGAAGAGAATGGTTTCAGCTTCTGAAAAGTGAAATGTGGAACTTGAAAGAAGTTAAGGCAGAAGTTTTCGGTCCTCTAGCGTTAAGTTACT ACGACTTGAGCCCAGACCTAAGACAATGCTTTCAATTTTGCGCGGTATTTCCCAAGGATTATGAAATAGAGAAGGACCAACTGATCAAGCTCTGGATGGC GCAAGGGTTCGTAAGAGCCGAAGAGAACGAAGAAACAGAGGATATAGGCGAAGAGTACTTCCAAATCTTAACCACGCGTTCCTTCTTTCAAGATTTCGAC ACTCGGGGAGAAGGCAAAGCCCGAGCGAGAACATTATGTAAGATGCACGATTTAGTGCACGACTTTGCACAGCTAGTAAGTAAGGAGTGTAGTCACATAA AAATGAACGAAGATGGGACCACCACTCCTTCTACCGCCAGCATAGGTGGTAGTAGTGTGGTCCGGAATTTGATGATCCAGTCCCATCACTGGAGGTCCCG TCCAATCAAAGGTTCCCTATTCTCTTCCACTACGGGTTTACGCAGTTTCATGGTGTCAAGTGGTCGCCTATACACGATCGAACCCAGCGCATTCGATCAT TCGCGACGCCTAAGGTCATTGGCTCTCTGCAAATGCTACCTCGGCGAAATTCCACCAACAATAAATCAGCTTATCCATCTGAGGCTTTTGGATGTGCGCG GGAATGAATTGAAAGAGTTGCCCGACGAAATATGCGAGCTTTACAATCTGTGGGCACTCATCCTGAACGGGAATAGTATGCTGAAGAAGGTACCGGTTGA AATCGGTAAGAAGCTAGTCAACCTAACACATTTCGAAAATGCGGATGTCCCAGCTCTCCTTCCGAAATCAATCGCGAGATTTGCTGATCGTCTCAAGACA TTAAATGACTTCATAATCTTCCCGGATCAGCCGGCAGAGAGTAGTACTAGTACTGCCACAATTGTTGATCTCAAGGACATGAATCGGCTTCGCGGAACAC TTAGGGTGGTTGGTCTAAGGAATGTGGCTGATTGTAACGAGGTGAAGCAAGCAAATTTTGCAGGGAAAACGGGTCTAAACTGTCTGTGGCTTACTTTCTG CAACGTCCGAGCACCACCGGTAATAGGTGCGAGTGGCAAAAAGGATGAACAAGTGCTGGAAGCAGTAAGGCCATCAACAAACTTGGAAGAACTCAATATA GAAGATTATAAGGGTGCTTTGATATCACCAAGCTGGATGATGTCACTCATTAACTTGACTCGCATTAAGGTAATCAATTGCGAGGTGGAGTATCTGCCTT GCTTAGGGGGTCTGCCATGCCTCGAACAAGTGTGTTTCGAGTGGATTCCAAGAGTGAAGAAGGTGGGTGTAGAATTTTTGGGACAAGAGCGCGAACAACA GAGCATTCGAGCATTTCCTAGGCTAACTACTCTTCGGTTTGAGTCGATGCGCAACTGGGAAGAGTGGGACGGGGCGTTGTTATCTTTGTCGTCAGTGATG CCCCGACTCCGTACGTTGTCCATGACGCGTTGTCGAAAGTTGAATGAGTTGCCGGAGTCGATTCTCCGGAAACCAACGCTGGAACATCTGGAAGTGCAGA GTAGCGGCGGTTTCAGGGGCTACAGGTTCGATCCAGAGGATATGAAGATGGAGCCTGGTGTGTGGGAGAAAATCTCTCACATTGGCATCATCAAGTTCGA TGGCATCGACATCCGAAAGGAATTCAAGAGCCAAATAGAGACACTTACAAAAGGTACATAA
AA sequence Show only first row Show all	>Lus10022792 pacid=23159991 polypeptide=Lus10022792 locus=Lus10022792.g ID=Lus10022792.BGIv1.0 annot-version=v1.0 MVAQIVSQILQELGSILTEEVKRRGKLVVGAEKDVKKLKSTFSAIESLLLDAEERQLRDEAVRDWVTKLNNVCFEIDDVLDEWRTAILKRKIEDDDDDDD VGYGWLELKLLEISNVLNRVCPFLPGYCFSVSEIGLRYDIASRIKELYEDLDHIDKDKNMFQFSASESSAKPRSLETSQNIDLSNVKGREVEVKVLREKL VHRDTSAKNVQSISIQGTGGLGKTTLAKLLYNDEVAKTCFDKRIWICVSDTFDQATIAKSILESVSGVRQKDKTLSKRLEEIHETIRGKRFLLVLDDVWE HSRNCWEELLSSVSSGSPGSKILVTTRKGEVSNALDCAQNNVILIGKLSEDACRVLFAEIAFHGWTAEERERVEDVCEGMAKKCCGSPLAVKVLAGVLRT KKSRREWFQLLKSEMWNLKEVKAEVFGPLALSYYDLSPDLRQCFQFCAVFPKDYEIEKDQLIKLWMAQGFVRAEENEETEDIGEEYFQILTTRSFFQDFD TRGEGKARARTLCKMHDLVHDFAQLVSKECSHIKMNEDGTTTPSTASIGGSSVVRNLMIQSHHWRSRPIKGSLFSSTTGLRSFMVSSGRLYTIEPSAFDH SRRLRSLALCKCYLGEIPPTINQLIHLRLLDVRGNELKELPDEICELYNLWALILNGNSMLKKVPVEIGKKLVNLTHFENADVPALLPKSIARFADRLKT LNDFIIFPDQPAESSTSTATIVDLKDMNRLRGTLRVVGLRNVADCNEVKQANFAGKTGLNCLWLTFCNVRAPPVIGASGKKDEQVLEAVRPSTNLEELNI EDYKGALISPSWMMSLINLTRIKVINCEVEYLPCLGGLPCLEQVCFEWIPRVKKVGVEFLGQEREQQSIRAFPRLTTLRFESMRNWEEWDGALLSLSSVM PRLRTLSMTRCRKLNELPESILRKPTLEHLEVQSSGGFRGYRFDPEDMKMEPGVWEKISHIGIIKFDGIDIRKEFKSQIETLTKGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10022792 [exp]	0	1
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10036116 [exp]	1.4	0.9549
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	3.5	0.9380
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	3.5	0.9344
AT3G14470			NB-ARC domain-containing disea...		Lus10042117 [exp]	4.2	0.9403
					Lus10015758 [exp]	4.9	0.9388
AT3G55610		P5CS2	delta 1-pyrroline-5-carboxylat...		Lus10001016 [exp]	6.5	0.9184
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10025987 [exp]	7.4	0.9371
AT2G34930			disease resistance family prot...		Lus10006948 [exp]	7.7	0.9258
AT1G27385			unknown protein		Lus10015781 [exp]	8.1	0.9179
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10001782 [exp]	10.6	0.9220

Compare expression of checked genes

Lus10022792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.