Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20140 673 / 0 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 670 / 0 RPT2A regulatory particle AAA-ATPase 2A (.1) AT5G58290 303 / 1e-98 RPT3 regulatory particle triple-A ATPase 3 (.1) AT5G20000 256 / 4e-80 RPT6A AAA-type ATPase family protein (.1) AT5G19990 255 / 9e-80 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G45000 246 / 1e-76 AAA-type ATPase family protein (.1.2) AT5G43010 244 / 4e-76 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G09100 243 / 2e-75 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 242 / 8e-75 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT1G53750 239 / 1e-73 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011901 [exp] 765 / 0 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 670 / 0 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 660 / 0 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 585 / 0 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10015524 [exp] 518 / 0 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10000030 [exp] 258 / 2e-84 AT4G29040 276 / 5e-93 regulatory particle AAA-ATPase 2A (.1) Lus10017762 [exp] 257 / 2e-80 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10020654 [exp] 247 / 9e-77 AT3G05530 783 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 247 / 1e-76 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252600 [exp] 692 / 0 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 680 / 0 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.016G028000 [exp] 303 / 2e-98 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 296 / 9e-96 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.010G098300 [exp] 258 / 1e-80 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 256 / 2e-80 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.002G031400 [exp] 248 / 2e-77 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 248 / 3e-77 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 247 / 4e-77 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 246 / 2e-76 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10022834 pacid=23160023 polypeptide=Lus10022834 locus=Lus10022834.g ID=Lus10022834.BGIv1.0 annot-version=v1.0 ATGGGTCAAGGAGCGTCAAGCGGAAACCGGCAGGGGTACCCCGGCGATCGGAAGCAGGATGGTGCCGACAAGAAGGAGAAGAAGTTCGAACCCGCTGCAC CACCGTCTCGCGTCGGGAGGAAACAGCGGAAGCAGAAAGGCTCCGAGGCCGCTGCCAGGCTTCCCGCGGTGACTCCCGTGACCAAGTGCAAGCTGAGGCT GCTGAAATTGGAGCGGGTGAAGGATTACCTGCTCATGGAGGAAGAGTTCGTGGCCAACCAGGAGAGGCTTAAGCCCCAGGAGGAGAAGGCCGAGGAGGAT CGATCCAAGGTCGACGACTTGAGAGGCTCGCCGATGAGCGTGGGAAACTTGGAGGAGTTGATCGATGAGAATCATGCCATAGTTTCTAGCTCGGTTGGGC CTGAGTATTACGTTGGGATTCTCTCGTTCGTTGATAAGGATCAGCTCGAGCCTGGATGCGCTATCTTGATGCATAATAAGGTTCTCTCCGTGGTTGGTCT TCTTCAAGATGACGTTGATCCAATGGTGTCAGTCATGAAAGTGGAATCGGCTCCACAAGAGTCTTATGCAGACATTGGTGGTTTAGATGCTCAGATACAG GAAATCAAAGAAGCAGTTGAACTTCCCTTGACTCATCCCGAACTATATGAAGATATCGGTATTAAACCACCAAAGGGTGTCATTTTGTATGGAGAGCCTG GGACTGGCAAGACACTGCTTGCAAAGGCTGTGGCACATTCAACATCAGCAACGTTCTTACGAGTTGTCGGCAGTGAGTTGATCCAGAAATACTTGGGAGA TGGACCAAAGTTGGTGCGAGAGGACCAAAGTTGGTGCGAGAGCTCTTCAGAGTGGCTGACGATCTCTCTCCATCAATCGTCTTCATCGATGAAATCGACG CAGTCGCTGGACGGTTTCGATTCTAGAGGAGACGTGAAAGTCATCCTTGCAACCAACCGGATCGAGAGTCTCGACCCTGCTCTGCTCCGGCCTGGCCGAA TCGACAGGAAGATCGAATTCCCTCTTCCCGATATCAAAACAAGGAGACGCATTTTCATGATACACACGTCGAGAATGACATTAGCCGATGATGTCAACTT GGAAGAATTCGTCATGACAAAGGACGAGTTCTCGGGAGCCGATATCAAGGCGATATGTACCGAAGCTGGCTTTCTCGCCCTTCGAGAGCGGCGTATGAAG GTGACTCATGTGGACTTCAAGAAGGCGAAGGAGAAAGTGATGTACAAGAAGAAAGAAGGGGTCCCCGAAGGACTCTACATATTGGAGACTTCTGTAGCTC CCCCTCCTACTGCGATGTATGTAACTTGGACTTCGCAAGCTTTGCTTCTACAGAAACATCCGGCACCGGCATCCTCCTTCGTAACTCTCAGGGGCAACAA GTTCTCAAGTTCCACTCCAGGCATATCCGGTGTCTTTCACCGTGAGGGGGAACTCACAACCATCCTAGTCTATGGAATGGACGTCGGCTCTCGGTCTTTC GTACGTTACATTTGA
AA sequence Show only first row Show all	>Lus10022834 pacid=23160023 polypeptide=Lus10022834 locus=Lus10022834.g ID=Lus10022834.BGIv1.0 annot-version=v1.0 MGQGASSGNRQGYPGDRKQDGADKKEKKFEPAAPPSRVGRKQRKQKGSEAAARLPAVTPVTKCKLRLLKLERVKDYLLMEEEFVANQERLKPQEEKAEED RSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDDVDPMVSVMKVESAPQESYADIGGLDAQIQ EIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVAHSTSATFLRVVGSELIQKYLGDGPKLVREDQSWCESSSEWLTISLHQSSSSMKST QSLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFMIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGFLALRERRMK VTHVDFKKAKEKVMYKKKEGVPEGLYILETSVAPPPTAMYVTWTSQALLLQKHPAPASSFVTLRGNKFSSSTPGISGVFHREGELTTILVYGMDVGSRSF VRYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	0	1
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	1.4	0.7970
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	6.3	0.7610
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10024597 [exp]	7.1	0.7538
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	9.2	0.7628
AT2G32980			unknown protein		Lus10035310 [exp]	12.0	0.6907
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	14.4	0.7937
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	15.9	0.7570
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10028885 [exp]	17.9	0.7423
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Lus10020180 [exp]	18.2	0.7496
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Lus10023050 [exp]	25.9	0.7355

Compare expression of checked genes

Lus10022834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.