Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28610 288 / 2e-93 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT3G04450 241 / 4e-75 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 240 / 1e-74 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT2G20400 209 / 9e-63 GARP myb-like HTH transcriptional regulator family protein (.1) AT5G06800 181 / 2e-52 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 167 / 2e-48 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 164 / 2e-45 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G24120 143 / 4e-39 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 142 / 6e-39 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT5G18240 137 / 4e-36 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022886 [exp] 845 / 0 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10024938 [exp] 823 / 0 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10008197 [exp] 318 / 2e-104 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 269 / 6e-85 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 263 / 2e-83 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10027958 [exp] 181 / 1e-52 AT5G29000 132 / 7e-35 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10035705 [exp] 171 / 9e-48 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 164 / 5e-45 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10023816 [exp] 160 / 1e-44 AT5G06800 224 / 2e-70 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257800 [exp] 437 / 2e-150 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.013G048000 [exp] 300 / 2e-97 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.019G020900 [exp] 287 / 2e-92 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 191 / 7e-56 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 185 / 5e-54 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 170 / 2e-47 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 166 / 4e-47 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 166 / 1e-46 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 163 / 2e-46 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G228500 [exp] 151 / 4e-41 AT5G06800 179 / 3e-52 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022885 pacid=23160036 polypeptide=Lus10022885 locus=Lus10022885.g ID=Lus10022885.BGIv1.0 annot-version=v1.0 ATGGAGGCACGGCCATCCTTATCCATGCAAAGATCAGGTGTGAATCAGCTTAGTAGTTTTGGTCTGTCTGGACCAATGTCCTCAGCATTTCCAGTTCTTC CTCTCTCTCCTGAAGATGCATATCCGAAGTTACCAACCTACCGGCAGGCTCCCATGGAAATGGACCGTACGGCAAGGTCCTCTTTGTCTTCTCACAGTGG TGCAGTGGGTCCCATCTTCTCATCATCTGCAGGCTTGTCAACTGGCTTCCAGTTCACTCCTGTCTCACTACAAGAGAAAAACTCGAGTTATCCTTTCGTT TCATCTACAGACATGTCAACTTTACCAGTGCCACAATCTTCTCAGTCTCAATTCCTTCCGCCCCCAACTTCAAGTCGTGATGCCAAGGGAAACAGTGATT CCTGGTCTGCAGAGCCTTTGTCTGGTTTTCTAGATTTTCCTGTCTCTCCGGTGCAAACCAGTCAAATTGGCAGCAATAGTTGTAATGTCATTGTCTCTGA GGATATTTGCAAAAGAAATGACTGGCAGAATTGGGCGGACGAGTTAATTACCAGTGACGACACATTGACATCTACTTGGAATGAGCTTCTGGTTGACACC AATATTGCAGAAATGAGACCAAAGATGACATACCAGGTGCCCAAACCATCTCCATCTCCTGCTGCATCTGGTTTGGGGATCCGCCCGGCTCCTGTTGCAT CTCCTGCTCCTGCAGCAAGCAATGGCACATCGAAGTCACGCATGAGGTGGACTCCTGAACTTCATGAATCCTTTGTTGAGGCTGTCAACCAGCTTGGCGG AGCCACACCAAAAGGAGTACTGAAGCTGATGAAAGTTGACGGATTGACCATTTATCATGTAAAAAGTCACTTGCAGAAATACAGGACAGCTAGATATAGA CCGGAGCCATCTGAAGGATCATCAGAGCAGAGACCGACTCCTATAGAACAATTATCATCCCTCGACTTGAAGACGGGTATCGCGATAACTGAAGCTCTGC GAATGCAAATGGAAGTTCAGAAGCGCCTGCACGAGCAGCTTGAGATCCAGCGGAATCTTCAGCTGCGTATTGAAGAACAAGGGAGAAACCTCCAAATGAT GTTTGAGAAGCAGTGTAAGTCGGGCAGTGACAAGCTGAAAGCGGCATCATCACCATCCTTGGAGAATGCAGCAGGCGCCGTGCTGGCTTCTGATGCAGTT CTAGATTCAATCGGTACAGAAGCTGCCGTCTTAAAGGCAAACGAGACAGCCAACGACAGAACTGCTGTGACGTCTTCATTAGACGAAAGTCCAACGAGCC CTAGTGGGCCGCAAAGATCATCTCATGCCTCCGAGCCAGATGATCATCCGTCAAACAAACGTGTAAGAAGTGATCCGTAA
AA sequence Show only first row Show all	>Lus10022885 pacid=23160036 polypeptide=Lus10022885 locus=Lus10022885.g ID=Lus10022885.BGIv1.0 annot-version=v1.0 MEARPSLSMQRSGVNQLSSFGLSGPMSSAFPVLPLSPEDAYPKLPTYRQAPMEMDRTARSSLSSHSGAVGPIFSSSAGLSTGFQFTPVSLQEKNSSYPFV SSTDMSTLPVPQSSQSQFLPPPTSSRDAKGNSDSWSAEPLSGFLDFPVSPVQTSQIGSNSCNVIVSEDICKRNDWQNWADELITSDDTLTSTWNELLVDT NIAEMRPKMTYQVPKPSPSPAASGLGIRPAPVASPAPAASNGTSKSRMRWTPELHESFVEAVNQLGGATPKGVLKLMKVDGLTIYHVKSHLQKYRTARYR PEPSEGSSEQRPTPIEQLSSLDLKTGIAITEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRNLQMMFEKQCKSGSDKLKAASSPSLENAAGAVLASDAV LDSIGTEAAVLKANETANDRTAVTSSLDESPTSPSGPQRSSHASEPDDHPSNKRVRSDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022885 [exp]	0	1
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	1.0	0.8914
AT1G70570			anthranilate phosphoribosyltra...		Lus10036848 [exp]	3.2	0.8563
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	6.3	0.8506
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	13.6	0.8552
AT5G43830			Aluminium induced protein with...		Lus10006624 [exp]	22.8	0.8555
AT3G02540		RAD23C, RAD23-3	RADIATION SENSITIVE23C, PUTATI...		Lus10041465 [exp]	23.5	0.8119
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10028984 [exp]	26.5	0.8476
AT5G22040			unknown protein		Lus10008373 [exp]	31.0	0.8551
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	33.3	0.8321
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10017366 [exp]	35.6	0.8483

Compare expression of checked genes

Lus10022885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.