Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28610 299 / 1e-97 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G29000 250 / 2e-78 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04450 248 / 9e-78 GARP Homeodomain-like superfamily protein (.1.2) AT2G20400 211 / 1e-63 GARP myb-like HTH transcriptional regulator family protein (.1) AT5G06800 186 / 2e-54 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 176 / 1e-51 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 172 / 2e-48 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G24120 149 / 3e-41 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 147 / 7e-41 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT1G79430 140 / 2e-37 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022885 [exp] 845 / 0 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10024938 [exp] 841 / 0 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10008197 [exp] 325 / 6e-107 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 275 / 2e-87 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 270 / 6e-86 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10035705 [exp] 178 / 3e-50 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10023816 [exp] 169 / 4e-48 AT5G06800 224 / 2e-70 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 166 / 7e-48 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 171 / 1e-47 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257800 [exp] 427 / 4e-146 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.013G048000 [exp] 305 / 5e-99 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.019G020900 [exp] 292 / 2e-94 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 198 / 2e-58 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 192 / 2e-56 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 174 / 3e-50 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 172 / 9e-50 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 176 / 2e-49 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 173 / 3e-49 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G228500 [exp] 160 / 2e-44 AT5G06800 179 / 3e-52 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022886 pacid=23160010 polypeptide=Lus10022886 locus=Lus10022886.g ID=Lus10022886.BGIv1.0 annot-version=v1.0 ATGGAGGCACGGCCATCCTTATCCATGCAAAGATCAGGTGTGAATCAGCTTAGTAGTTTTGGTCTGTCTGGACCAATGTCCTCAGCATTTCCAGTTCTTC CTCTCTCCCCTGAAGATTCATATCCGAAGTTACCAACCTACCGGCAGGCTCCCATGGAAATGGACCGTACGGCAAGGTCCTCTTTGTCTTCTAACAGTGG TGCAGTGGGTCCCATCTTCTCATCATCTGCAGGCTTGTCAACAGGCTTCCAGTTCACTCCTGTCTCACTGCAAGAGAAAAACTCGAGTTATCCTTTCGTT TCATCTACAGACATGTCAACTTTACCAGTGCCACAATCTTCTCAGTCTCAATTCCTTCCGCCCCCAACTTCAAGTCGTGATGCCAAGGGAAACAGTGATT CCTGGTCTGCAGAGCCTTTGTCTGGTTTTCTAGATTTTCCTGTCTCTCCGGTGCAAACCAGTCAAATTGGCAGCAATAGTTGTAATGTCATTGTCTCTGA GGATATTTGCAAAAGAAATGACTGGCAGAATTGGGCGGACGAGTTAATTACCAGTGACGACTCGTTGACATCTACTTGGAATGAGCTTCTGGTTGACACC AATATTTCAGAAATGGGACCAAAGATAACATACCAGGTGCCCAAACCATCTCCATCTCCTGCTGCATCTGGTTTGGGGATCCGCCCTGCTCCTGTTGCAT CTCCTGCTCCTGCAGCAAGCAATGGCACATCGAAGTCACGCTTGAGGTGGACTCCTGAACTTCATGAATCCTTTGTTGAGGCTGTCAGCCGGCTTGGCGG TAGCGAAAGAGCCACACCAAAAGGAGTGCTGAAGCTGATGAAAGTTGAAGGATTGACCATTTATCATGTAAAAAGTCACTTGCAGAAATACAGGACAGCT AGATATAGACCGGAGCCATCTGAAGGATCATCAGAGCAGAGACCGACTCCTATAGAACAATTATCATCCCTCGACTTGAAGACGGGTATCGCGATAACTG AAGCTCTGCGAATGCAAATGGAAGTTCAGAAGCGCCTGCACGAGCAGCTTGAGATCCAGCGGAATCTTCAGCTGCGTATTGAAGAACAAGGGAGAAACCT CCAAATGATGTTTGAGAAGCAGTGTAAGTCGGGCAGTGACAAGCTGAAAGCGGCATCATCACCATCCTTGGAGAATGCAGCAGGCGCCGTGCTGGCTTCT GATGCAGTTCTAGATTCAATCGGTACAGAAGCTGCCGTCTTAAAGGCAAACGAGACAGCCAACGACAGAACTGCTGTGACGTCTTCATTAGACGAAAGTC CAACGAGCCCTAGTGGGCCGCAAAGATCATCTCATGCCTCCGAGCCAGATGATCATCCGTCAAACAAACGTGTAAGAAGTGATCCGTAA
AA sequence Show only first row Show all	>Lus10022886 pacid=23160010 polypeptide=Lus10022886 locus=Lus10022886.g ID=Lus10022886.BGIv1.0 annot-version=v1.0 MEARPSLSMQRSGVNQLSSFGLSGPMSSAFPVLPLSPEDSYPKLPTYRQAPMEMDRTARSSLSSNSGAVGPIFSSSAGLSTGFQFTPVSLQEKNSSYPFV SSTDMSTLPVPQSSQSQFLPPPTSSRDAKGNSDSWSAEPLSGFLDFPVSPVQTSQIGSNSCNVIVSEDICKRNDWQNWADELITSDDSLTSTWNELLVDT NISEMGPKITYQVPKPSPSPAASGLGIRPAPVASPAPAASNGTSKSRLRWTPELHESFVEAVSRLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA RYRPEPSEGSSEQRPTPIEQLSSLDLKTGIAITEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRNLQMMFEKQCKSGSDKLKAASSPSLENAAGAVLAS DAVLDSIGTEAAVLKANETANDRTAVTSSLDESPTSPSGPQRSSHASEPDDHPSNKRVRSDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022886 [exp]	0	1
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10022885 [exp]	1.0	0.8914
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10013966 [exp]	4.9	0.8027
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10000883 [exp]	8.7	0.8275
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	9.7	0.8515
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10024411 [exp]	16.3	0.8481
AT1G26380			FAD-binding Berberine family p...		Lus10038437 [exp]	21.4	0.7739
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	22.6	0.7367
AT5G47430			DWNN domain, a CCHC-type zinc ...		Lus10007803 [exp]	30.7	0.8019
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	35.8	0.7897
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	37.9	0.7846

Compare expression of checked genes

Lus10022886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.