Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 303 / 2e-87 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 264 / 7e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 187 / 1e-48 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 150 / 5e-37 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58400 133 / 1e-31 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 133 / 1e-31 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 132 / 2e-31 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 131 / 6e-31 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 131 / 6e-31 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 130 / 9e-31 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003571 [exp] 1145 / 0 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 1137 / 0 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 1054 / 0 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 1021 / 0 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 936 / 0 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10029705 [exp] 407 / 3e-134 AT3G14460 112 / 5e-27 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 339 / 8e-99 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 322 / 1e-93 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 321 / 4e-93 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123500 [exp] 565 / 0 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 559 / 0 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 556 / 0 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.015G121800 [exp] 545 / 1e-178 AT3G14470 377 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 526 / 6e-172 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 522 / 3e-170 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121900 [exp] 505 / 2e-163 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 502 / 8e-163 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 477 / 6e-154 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.008G212200 [exp] 468 / 6e-150 AT3G14470 392 / 8e-121 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10022900 pacid=23159929 polypeptide=Lus10022900 locus=Lus10022900.g ID=Lus10022900.BGIv1.0 annot-version=v1.0 ATGGTTGCTCAGATTGTTTCCTCAATCCTCGGCCAGTTAGAATCCGTCTTGACCGAAGAGCTGAAGCGAAGAGGGAAGCTGGTTGTAGGTGCGGAGAAAG ACGTGAAGAAGCTTACATCCACTTTCTCTTCCATTGAAGCCCGTTTGTTGGATGCCGAAGAGAGGCAGCTTACTGATAAAGATGTCAAAGTCTGGCTGGC GAAGCTCAAGGACGTGTGCTACAAGATCGACGATGTGCTGGACGAGTGGAGAACTGAGATCCTCAAGCGTCAGGTTGAGGACGATGAGGATAATAATGGC AGTTGCCTGGAGCTGAAGCTGCTTGACATCTCTAATCTGCTTAAACGAGTATGTCCATTTCTTCCTAGTTACTGTTTCTCTCTTGTTGAGATTGGTGTTC GATACGATATTGCTTCTAGGATCAAGGACCTCTATGAACATCTTGAAGATATAGACAGAGATAAAAATATGTTCAATTTTGCTTCCAAGCCAGCTATAAC ATTCAAGAGCTTGGAAACTAGCTCGAATATCAAATTCTCAGATGTGAAAGGCAGGGAAGAAGAGACGAAAATATTAAAGGAGAAATTACTGCATGTCAGT GATCATGGTGTTCGGAGCATCTCTATCCAGGGCACCGGCGGACTTGGCAAAACGACATTAGCCAAACTACTCTACAACGATGAAGATGTGAAGAGTGCTT TCGACAAGAGTGGCAGAATTTGGGTTTGTGTGTCCGAAACTTTTGACCCTAGTACGGTTGCTAGAACCATAATCAAACAACTTATCGGAAGTGATCCGGA AAGTAACGTATTGTCAATCATGTTGAAGGAGATATCTGATAATATTGAAGGCAAGAGGTTTCTTTTGGTTCTTGACAATGTGTGGGAAGGCAACCGTACA AAATGGGAAGAACTGCAGGACGCTGTCTCGTATGGCTCCCCGGGTAGCAAAATCTTGGTGACTACACGTAAAGGAGAGGTTTCTCGTGCATTACGTTGCA TCGAAGATGATGTGCTTTTAATAGGGAAGGTGTCGGACAATGTATGCCAAGCTATTTTCACTCAGGTAGCATTTCACGGATGGACTGCAGTGGAGCAATT GCGTTTAGAAGGTCTGTGTAAAGATGTCGTCAACAAGTGTGATGGCTCGCCACTGGCCGCAAAAGTTTTGGGAGGGATCATGCAGGCCAAGAAAAGCAAG AGTGGATGGCTCAAGATCCTTCAAAGTGAAATGTGGCACTTGGAGGGAGTTAGAGAAGAAGTTTTTGGTCCTTTGACATTGAGTTACTACGACTTGACTC CGGAGCTCAGACAGTGCTTTCAGTTTTGTGCCGTTTTTCCCAAGGATTATTTATTGGATATGGATCAATTGATCAAGTTGTGGATATCTCACGGTTTTGT TAGAGCAAGAGGAAACCAAGAACTGGAGGATATCGCCGAAGATTATTTCGAAAGCTTAGCCTCACGTTCCTTCTTTCAAGATTTTCAAAATAAAGAACGT TCTGGAGGGGGGAAAACATACTGCAAAATGCACGACTTAGTGCATGATTTCGCACAAATGCTAAGTAACGGCGAATGTGTTAGCATGACAAGCAAAAACA CGAAAGATGTGACTACCGTCGCCATCAACAGTAGTGCAGTCCTTAATTTGAGGATAGATTACGACTCGACATGGGATCTTTCCATCGACAGTTCCCACGT CCTTTTGACGAAGGATTTACGTAGTTTCATGGCAAACTCGTTCAAGGACATGGAATCTGATGTGTGGGATCAATTGTGCGGCATAAGGTCCTTAGTTCTC ATTGATAGTCGGCTCAACAAAATCCCATCGACAATAGACAAGTTGATCCACTTGAGGCATATGGATTTGTCCTTTAATGCCGAATTGGAAGAGCTGCCCG ATGAAATATGCAAGCTTTACAACTTATGGACGCTCATCATCAACGAGTGTTCCAATCTAAAGAGGCTACCTCTCAGAATGGGCGACAAACTAGTGAACCT AAAGCATCTCGAAAACGGGGAAGTACCTGCGCCCCTTCCCAAATCAATCGGGAGACTAACTCGTCTCAAGACACTAACAGAGTTCCGAATTCACAAGTCT GATGAACAAGGACGAGAATCTAGTACAATCGCTGATCTCAAGGACATGAACCAGCTCCAAGGAACTCTTCGTGTGGTTGGTCTTAGTAATGTGGCAGACT GTTATGAGGTAGAACAAGCATGTTTCTCCAAGAAAGCATCCCTAACTTATTTATGGCTCCATTTCGGAGACAACATTGGTGATACCGATAGCGATTACAA TGACGAGGATAACAAGCATGCAGAAGAAGTGTTGGAAGCTGTTACACCACCAACCGACTTGGCAGAACTCTTCATAGAAGCTTATATTGGTGCTTCCATA TCCCCGAGTTGGATGGTAACACTCTCGAACTTGACTCGTCTGGCACTAATGTATTGCGACGAGGTGAAACATCTGCCATCTTTAGGGGGTTTGCGGTCTC TCGAAAAACTAATGTTCTTGCAGATGGGCAAAGTGGGTAGAGTGGGTGTCGAGTTGCTAGGAAATCAAGAACACAAAGAACAGCAAGATATCGGAGCATT TCCGAGGCTGGAAGTGCTCCAGTTTTACGAGATGGGGGGATGGGAAGAGTGGGATGATGATGATACAATGATGATGTTATTGTCACCATCGGTTATGCCT CGGCTACGTTCCTTGGTTTTGGACAACTGTTATAAGCTGAAGAAGTTGCCGGATGCAATTCTCCGGAAACCGACACTCCAACGGCTCGAAATGAATGGTT GCAACATGCTTACTACAAGTTACATGTGTGGCGGCGGGGACAGCGACGACTACTCTATTGATCAAATGGTGGTTAGTGAAGTATGGGACAAGATCTCTCA CATCCCCACCGTCATATTTGACCAAGTCGATGTCCGAACTCGAGAAAGCGTTGAAATGAACACGGACTGGTGA
AA sequence Show only first row Show all	>Lus10022900 pacid=23159929 polypeptide=Lus10022900 locus=Lus10022900.g ID=Lus10022900.BGIv1.0 annot-version=v1.0 MVAQIVSSILGQLESVLTEELKRRGKLVVGAEKDVKKLTSTFSSIEARLLDAEERQLTDKDVKVWLAKLKDVCYKIDDVLDEWRTEILKRQVEDDEDNNG SCLELKLLDISNLLKRVCPFLPSYCFSLVEIGVRYDIASRIKDLYEHLEDIDRDKNMFNFASKPAITFKSLETSSNIKFSDVKGREEETKILKEKLLHVS DHGVRSISIQGTGGLGKTTLAKLLYNDEDVKSAFDKSGRIWVCVSETFDPSTVARTIIKQLIGSDPESNVLSIMLKEISDNIEGKRFLLVLDNVWEGNRT KWEELQDAVSYGSPGSKILVTTRKGEVSRALRCIEDDVLLIGKVSDNVCQAIFTQVAFHGWTAVEQLRLEGLCKDVVNKCDGSPLAAKVLGGIMQAKKSK SGWLKILQSEMWHLEGVREEVFGPLTLSYYDLTPELRQCFQFCAVFPKDYLLDMDQLIKLWISHGFVRARGNQELEDIAEDYFESLASRSFFQDFQNKER SGGGKTYCKMHDLVHDFAQMLSNGECVSMTSKNTKDVTTVAINSSAVLNLRIDYDSTWDLSIDSSHVLLTKDLRSFMANSFKDMESDVWDQLCGIRSLVL IDSRLNKIPSTIDKLIHLRHMDLSFNAELEELPDEICKLYNLWTLIINECSNLKRLPLRMGDKLVNLKHLENGEVPAPLPKSIGRLTRLKTLTEFRIHKS DEQGRESSTIADLKDMNQLQGTLRVVGLSNVADCYEVEQACFSKKASLTYLWLHFGDNIGDTDSDYNDEDNKHAEEVLEAVTPPTDLAELFIEAYIGASI SPSWMVTLSNLTRLALMYCDEVKHLPSLGGLRSLEKLMFLQMGKVGRVGVELLGNQEHKEQQDIGAFPRLEVLQFYEMGGWEEWDDDDTMMMLLSPSVMP RLRSLVLDNCYKLKKLPDAILRKPTLQRLEMNGCNMLTTSYMCGGGDSDDYSIDQMVVSEVWDKISHIPTVIFDQVDVRTRESVEMNTDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10022900 [exp]	0	1
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10030244 [exp]	1.0	0.8543
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033500 [exp]	3.5	0.8406
AT3G16970			Plant self-incompatibility pro...		Lus10030565 [exp]	7.1	0.7860
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	7.3	0.8492
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	7.7	0.7763
AT3G47570			Leucine-rich repeat protein ki...		Lus10017400 [exp]	8.1	0.8478
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	12.2	0.7680
					Lus10033476 [exp]	15.0	0.8243
AT1G32583			unknown protein		Lus10001911 [exp]	15.7	0.8203
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	17.0	0.7414

Compare expression of checked genes

Lus10022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.