Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41020 112 / 6e-29 MYB myb family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022926 [exp] 180 / 7e-54 AT5G41020 359 / 1e-117 myb family transcription factor (.1) Lus10041714 [exp] 152 / 3e-43 AT5G41020 337 / 1e-108 myb family transcription factor (.1) Lus10024036 [exp] 148 / 8e-42 AT5G41020 336 / 3e-108 myb family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G168900 [exp] 139 / 2e-38 AT5G41020 398 / 1e-130 myb family transcription factor (.1) Potri.015G095000 [exp] 139 / 3e-38 AT5G41020 410 / 1e-134 myb family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022932 pacid=23159904 polypeptide=Lus10022932 locus=Lus10022932.g ID=Lus10022932.BGIv1.0 annot-version=v1.0 ATGCTCAGAATTGAAGTTGATCATGGAGTCGGCTCCTTGAACAGAATTGAAGTTGAGAACTCCAGCTCTTCGCATGAGAGGAGGAGGAGGAAGAAGAAGA AGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGAAGCATGCCAATGGTGATGAGGTAATGAATGAAGATTTAGGTGATGGCGAGAATAAGGAGTTGGTGAG AGGGAAGCGCTTCTCACTTGAGGAGGAAAAATTGGTAGAAGCTGCTTGCTGGGAGAAGCATAAACAAGTCAGCAACTGCTGGAAACAAATATGCGCTGTC ATACCTTGGCGCCCACACGAGAGCGTATGCTGTCGTGCTCATATCCTATTCGAAAGGGGCGAGACCCGTAAATGGACTGAAGAAGAGTGCGAGCTTGTAC TCAAGTATCATGAAAAATACGGTGCAGAATGGAGAACCTTGGCCTATGCACTCGGGAAGCACAGGCATCATGTAAAGGACGTCTTCCGGAGGCTGAAATT GAGGAACAGAAATTCGGGACACTGGTCTCAAGACGACCAAAAAACTAAGCATTACAGAATAAGCCGTAATGCTGGCCTAGCTTAG
AA sequence Show only first row Show all	>Lus10022932 pacid=23159904 polypeptide=Lus10022932 locus=Lus10022932.g ID=Lus10022932.BGIv1.0 annot-version=v1.0 MLRIEVDHGVGSLNRIEVENSSSSHERRRRKKKKKKKKKKKKRKKHANGDEVMNEDLGDGENKELVRGKRFSLEEEKLVEAACWEKHKQVSNCWKQICAV IPWRPHESVCCRAHILFERGETRKWTEEECELVLKYHEKYGAEWRTLAYALGKHRHHVKDVFRRLKLRNRNSGHWSQDDQKTKHYRISRNAGLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	0	1
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	1.0	0.9996
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	2.0	0.9895
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	3.3	0.9482
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	3.5	0.9796
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10025832 [exp]	5.1	0.8934
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	5.3	0.9695
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	5.9	0.9528
					Lus10004634 [exp]	6.5	0.9568
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	7.1	0.9607
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10019783 [exp]	8.4	0.9487

Compare expression of checked genes

Lus10022932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.