Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06160 113 / 1e-29 AP2_ERF ORA59 octadecanoid-responsive Arabidopsis AP2/ERF 59 (.1) AT2G31230 109 / 3e-28 AP2_ERF ATERF15 ethylene-responsive element binding factor 15 (.1) AT3G23240 108 / 3e-28 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT4G18450 84 / 2e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G43410 80 / 2e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23220 80 / 2e-18 AP2_ERF ESE1 ethylene and salt inducible 1, Integrase-type DNA-binding superfamily protein (.1) AT5G51190 81 / 7e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G04370 79 / 7e-18 AP2_ERF ATERF14 Ethylene-responsive element binding factor 14 (.1) AT2G44840 81 / 1e-17 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 80 / 2e-17 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011829 [exp] 109 / 4e-28 AT3G23240 209 / 4e-68 ethylene response factor 1 (.1) Lus10021193 [exp] 108 / 6e-28 AT3G23240 209 / 2e-68 ethylene response factor 1 (.1) Lus10014655 [exp] 108 / 8e-28 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10006579 [exp] 106 / 6e-27 AT3G23240 211 / 4e-69 ethylene response factor 1 (.1) Lus10022015 [exp] 105 / 7e-27 AT3G23240 176 / 1e-55 ethylene response factor 1 (.1) Lus10042557 [exp] 99 / 1e-24 AT3G23240 155 / 7e-48 ethylene response factor 1 (.1) Lus10033885 [exp] 100 / 2e-24 AT3G23240 142 / 7e-42 ethylene response factor 1 (.1) Lus10003562 [exp] 99 / 2e-24 AT3G23240 146 / 1e-43 ethylene response factor 1 (.1) Lus10027469 [exp] 96 / 4e-23 AT3G23240 145 / 2e-43 ethylene response factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039100 [exp] 123 / 9e-34 AT3G23240 147 / 3e-44 ethylene response factor 1 (.1) Potri.005G223200 [exp] 120 / 1e-32 AT3G23240 165 / 4e-51 ethylene response factor 1 (.1) Potri.010G072300 [exp] 116 / 4e-31 AT3G23240 201 / 2e-65 ethylene response factor 1 (.1) Potri.008G166200 [exp] 116 / 5e-31 AT3G23240 202 / 1e-65 ethylene response factor 1 (.1) Potri.019G014409 [exp] 107 / 2e-27 AT3G23240 161 / 1e-49 ethylene response factor 1 (.1) Potri.005G223300 [exp] 106 / 4e-27 AT3G23240 163 / 5e-50 ethylene response factor 1 (.1) Potri.013G045200 [exp] 105 / 1e-26 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.002G039000 [exp] 103 / 3e-26 AT3G23240 138 / 2e-40 ethylene response factor 1 (.1) Potri.010G072400 [exp] 82 / 5e-19 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.011G061700 [exp] 83 / 8e-19 AT3G23240 111 / 1e-30 ethylene response factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10022935 pacid=23159985 polypeptide=Lus10022935 locus=Lus10022935.g ID=Lus10022935.BGIv1.0 annot-version=v1.0 ATGGAAACTTCCACCTTCCGCTACACTTTTAATCACTTCCCTAAACCAGAATTTGACTCCGATTACAATTACGATTCTTCCTCTTTCGCCACTTCATCTT CTTTCTCCAGCTGGGACGATCTCCTCACCATCCCACCTTACTCTGACTTCCCCCACTTCCATAACACGGCGGCCCCGGCGATAGAGGAGGAAATGATGAT GACCCCTCCCGGCAGAGGCGGCGGAGGAGGAGGAGGAGCAAGGACTTCAGAATATTCCAACAACTCAGGATCCTCCTCTGTTTCAGTCGGGACCAAGTTG GAAGAGGACGCCACATCCGACGACGCCGCCACGGCGGCGGCGAAGTCGTCGTCGTTTTCAACGACGACGCCGGCGTACAGAGGGGTGAGGAAGAGGCCGT GGGGGAAGTTCGCTGCGGAGATAAGGGACTCGACTAGGAACGGCGTCCGCGTCTGGCTGGGGACTTTCGACACGCCGGAAGCGGCGGCGATGGCGTACGA CCAGGCGGCTTTCGCCGTCCGGGGGACGACGGCGGTGCTCAACTTCCCAGTGGACGCCGTGAGGGAGTCTCTGGAAACGATGAAGATGTCCGGTGGCGGC GGACGGACTGGTCAGGAAGAGGGAGATGATGATTCGGGTACAGGGGTTTCCCCTGTTTTGGCTCTGAAGCGGCGGAACTCTGTTCGGCGCCGGACGACGG CGGCTGAGAAGAAGGGGAAGAGGGAAAAGAAGCGGCCAGCATCGGCTGCGGCGGGAGAGAAGGGATTGGAAGTGAATAGGATACAACACAAGATTGGGAA ATCGGAGAAGATTGTTAGTAGTAGTAGTAGTAATAATAAGAATGTGGTGGTGCTGGAGGATCTGGGTGTGGATTACTTGGACGAATTGTTGAAGGTGTGT ATGCAGGACACTAGTCAAATTTCCTCATTACTTCCATGGTGA
AA sequence Show only first row Show all	>Lus10022935 pacid=23159985 polypeptide=Lus10022935 locus=Lus10022935.g ID=Lus10022935.BGIv1.0 annot-version=v1.0 METSTFRYTFNHFPKPEFDSDYNYDSSSFATSSSFSSWDDLLTIPPYSDFPHFHNTAAPAIEEEMMMTPPGRGGGGGGGARTSEYSNNSGSSSVSVGTKL EEDATSDDAATAAAKSSSFSTTTPAYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDTPEAAAMAYDQAAFAVRGTTAVLNFPVDAVRESLETMKMSGGG GRTGQEEGDDDSGTGVSPVLALKRRNSVRRRTTAAEKKGKREKKRPASAAAGEKGLEVNRIQHKIGKSEKIVSSSSSNNKNVVVLEDLGVDYLDELLKVC MQDTSQISSLLPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	0	1
AT5G25170			PPPDE putative thiol peptidase...		Lus10017127 [exp]	5.5	0.6601
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	7.0	0.6959
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	11.2	0.6872
AT5G10560			Glycosyl hydrolase family prot...		Lus10019240 [exp]	13.5	0.6323
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	15.3	0.6504
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026931 [exp]	17.5	0.6283
AT1G68070			Zinc finger, C3HC4 type (RING ...		Lus10034587 [exp]	22.2	0.6605
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	27.2	0.6574
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10041104 [exp]	27.4	0.6299
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	31.9	0.6581

Compare expression of checked genes

Lus10022935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.