Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38250 488 / 7e-172 Transmembrane amino acid transporter family protein (.1) AT2G42005 482 / 1e-169 Transmembrane amino acid transporter family protein (.1) AT5G65990 428 / 2e-148 Transmembrane amino acid transporter family protein (.1) AT3G11900 189 / 2e-55 ANT1 aromatic and neutral transporter 1 (.1) AT5G15240 52 / 3e-07 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 49 / 7e-06 Transmembrane amino acid transporter family protein (.1) AT5G40780 43 / 0.0003 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT3G54830 43 / 0.0003 Transmembrane amino acid transporter family protein (.1) AT1G48640 42 / 0.0005 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001390 [exp] 739 / 0 AT2G42005 581 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10026549 [exp] 548 / 0 AT2G42005 548 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10021089 [exp] 191 / 8e-56 AT3G11900 501 / 2e-176 aromatic and neutral transporter 1 (.1) Lus10017224 [exp] 190 / 9e-56 AT3G11900 502 / 3e-177 aromatic and neutral transporter 1 (.1) Lus10013835 [exp] 171 / 6e-52 AT2G42005 178 / 2e-55 Transmembrane amino acid transporter family protein (.1) Lus10034353 [exp] 47 / 2e-05 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 46 / 5e-05 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10029702 [exp] 44 / 0.0002 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 44 / 0.0002 AT1G77380 684 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G206800 [exp] 552 / 0 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 546 / 0 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 485 / 8e-171 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G064500 [exp] 199 / 5e-59 AT3G11900 521 / 0.0 aromatic and neutral transporter 1 (.1) Potri.013G103500 [exp] 44 / 0.0001 AT5G09220 427 / 1e-145 amino acid permease 2 (.1) Potri.006G235901 [exp] 40 / 0.0002 AT1G10010 103 / 2e-27 amino acid permease 8 (.1) Potri.008G086500 [exp] 42 / 0.0006 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.006G236000 [exp] 42 / 0.0006 AT1G10010 580 / 0.0 amino acid permease 8 (.1) Potri.001G335300 [exp] 42 / 0.0007 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10022995 pacid=23146108 polypeptide=Lus10022995 locus=Lus10022995.g ID=Lus10022995.BGIv1.0 annot-version=v1.0 ATGGTGTTCGAGAAGAACAGGGGGACCTCGTCCTCAAACGCCCTCAAGCCCACGGAGAACACGCCTCTAATCGGGGAGCCAAAGCACCTATCTTCTCAAT CGAAGACCATCGCCAATATCTTCATCGCAATCGTAGGCGCAGGGGTTCTAGGGCTACCCTACTCCTTCAAGCGGACGGGATGGATCATGAGCCTGATGAT GCTCTTCTCCGTCTCCGCCCTCACCTACTACTGTATGATGCTCCTCGTCCACACCCGCCGCAAGCTACGCTTCATCGCCGGCGATTTCTCCATCATCAAC TCCTTCGGCGACTTGGGTTTCGCGGTATGTGGCTCTGTCGGCAGGGTTGTTGTTGATGTCATGATTGTGCTGGCTCAAGCTGGCTTCTGTGTAGGTTACT TAATCTTTATCGCTACTACTTTAGATAACCTGGTCGATTCGTACAACGCCTTACCGCCCACTTCGCCCACCGTATTATCCGCCCAATTCTTAGGGATTTC GGCCAAGAGTTTGTTCGTATGGGCTTGTTTTCCTTTCCAATTAGGACTCAACTCCATTGCAAGTCTCACCCATTTAGCCCCGTTGAGCATTTTCGCTGAT GTGGTTGACCTAGCTGCAATGGGGGTTGTGATTGTGGAGGATGTGATGCTTATGGCCAAGAACATCCCTGATGTCAAGACATTTGGGGATCTATCCGTGT TCTTCTACGGAATGGGCGTGGCTGTTTATGCATTTGAAGGGATTGGCATGGTCTTGCCTCTGGAATCGGAAGCTAAAGAGAAAGACAAGTTTGGGATGAA CTTAGGCCTTGCAGTGGCGGTTATCTCGCTCATCTATGGAGCATTTGGTGCACTTGGTTACCTTGCATTCGGCAACGAGACTAAAGATATCATCACTGCC AATCTCGGTGTGGGATGGATCAGCACCCTAGTTCAGCTTGGCTTATGCATAAACCTATTCTTCACATTCCCGCTGATGATGAACCCGGTATATGAAATCG TGGAGCGAAGGTTTTGGAACGGGAGGTACTGCCTGTGGCTGAGGTGGTTGCTGGTGTTGATCGTAAGCTTGGTTGCATTGTTGATCCCGAATTTTACAGA CTTCTTATCACTTGTGGGAAGCAGTGTCTGCTGTGGGTTGGGATTCGTTCTGCCTGCATTGTTTCACTTGCTTGTTTTCAAGGATGAAATGGGGTGGAAG GGCTGGACCATCGATGTTGGGATCGTGGCGTTAGGTGTCGTTCTCGGAGTCTCAGGGACTTGGTACTCTCTACTTGAGATTTTCTCTGTTAAGGTTTAG
AA sequence Show only first row Show all	>Lus10022995 pacid=23146108 polypeptide=Lus10022995 locus=Lus10022995.g ID=Lus10022995.BGIv1.0 annot-version=v1.0 MVFEKNRGTSSSNALKPTENTPLIGEPKHLSSQSKTIANIFIAIVGAGVLGLPYSFKRTGWIMSLMMLFSVSALTYYCMMLLVHTRRKLRFIAGDFSIIN SFGDLGFAVCGSVGRVVVDVMIVLAQAGFCVGYLIFIATTLDNLVDSYNALPPTSPTVLSAQFLGISAKSLFVWACFPFQLGLNSIASLTHLAPLSIFAD VVDLAAMGVVIVEDVMLMAKNIPDVKTFGDLSVFFYGMGVAVYAFEGIGMVLPLESEAKEKDKFGMNLGLAVAVISLIYGAFGALGYLAFGNETKDIITA NLGVGWISTLVQLGLCINLFFTFPLMMNPVYEIVERRFWNGRYCLWLRWLLVLIVSLVALLIPNFTDFLSLVGSSVCCGLGFVLPALFHLLVFKDEMGWK GWTIDVGIVALGVVLGVSGTWYSLLEIFSVKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	0	1
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	1.0	0.9658
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030605 [exp]	1.4	0.9151
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	1.7	0.9144
AT3G02720			Class I glutamine amidotransfe...		Lus10010964 [exp]	4.0	0.8716
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	5.2	0.8666
AT2G37110			PLAC8 family protein (.1)		Lus10026492 [exp]	5.7	0.8965
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10024871 [exp]	6.4	0.8210
AT2G45260			Plant protein of unknown funct...		Lus10030291 [exp]	10.0	0.8629
AT4G05460			RNI-like superfamily protein (...		Lus10038528 [exp]	10.8	0.8087
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	10.9	0.8755

Compare expression of checked genes

Lus10022995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.