Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36890 233 / 1e-75 MYB BIT1, ATMYB38, RAX2 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) AT5G57620 229 / 9e-74 MYB ATMYB36 myb domain protein 36 (.1) AT5G65790 226 / 5e-72 MYB AtMYB68 myb domain protein 68 (.1) AT5G23000 223 / 3e-71 MYB ATMYB37, RAX1 REGULATOR OF AXILLARY MERISTEMS 1, myb domain protein 37 (.1) AT3G49690 220 / 1e-70 MYB ATMYB84, RAX3 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) AT4G37780 211 / 5e-67 MYB ATMYB87 myb domain protein 87 (.1) AT5G56110 182 / 8e-56 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT4G09460 168 / 2e-51 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G21440 171 / 5e-51 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G15310 171 / 5e-51 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001394 [exp] 380 / 1e-133 AT5G57620 236 / 2e-76 myb domain protein 36 (.1) Lus10013830 [exp] 291 / 5e-98 AT5G57620 236 / 1e-75 myb domain protein 36 (.1) Lus10026543 [exp] 278 / 1e-92 AT2G36890 234 / 6e-75 REGULATOR OF AXILLARY MERISTEMS 2, BLUE INSENSITIVE TRAIT 1, MYB DOMAIN PROTEIN 38, Duplicated homeodomain-like superfamily protein (.1) Lus10016139 [exp] 248 / 4e-81 AT5G57620 236 / 6e-76 myb domain protein 36 (.1) Lus10021428 [exp] 248 / 4e-81 AT5G57620 248 / 2e-80 myb domain protein 36 (.1) Lus10007248 [exp] 227 / 2e-72 AT5G57620 259 / 3e-84 myb domain protein 36 (.1) Lus10011606 [exp] 227 / 2e-72 AT5G57620 245 / 3e-79 myb domain protein 36 (.1) Lus10039646 [exp] 226 / 4e-72 AT5G57620 244 / 6e-79 myb domain protein 36 (.1) Lus10028248 [exp] 226 / 5e-72 AT5G65790 253 / 2e-82 myb domain protein 68 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G099200 [exp] 249 / 1e-81 AT5G57620 234 / 3e-75 myb domain protein 36 (.1) Potri.006G123400 [exp] 247 / 9e-81 AT5G57620 233 / 9e-75 myb domain protein 36 (.1) Potri.009G007100 [exp] 247 / 9e-81 AT5G57620 239 / 5e-77 myb domain protein 36 (.1) Potri.004G215100 [exp] 244 / 1e-79 AT5G57620 240 / 2e-77 myb domain protein 36 (.1) Potri.002G113700 [exp] 228 / 3e-73 AT3G49690 239 / 5e-77 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.018G095900 [exp] 227 / 2e-72 AT5G57620 275 / 2e-90 myb domain protein 36 (.1) Potri.007G007900 [exp] 226 / 2e-72 AT3G49690 253 / 1e-82 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G234200 [exp] 224 / 2e-72 AT3G49690 232 / 7e-75 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1) Potri.006G170800 [exp] 224 / 2e-71 AT5G57620 268 / 5e-88 myb domain protein 36 (.1) Potri.018G058800 [exp] 214 / 5e-69 AT3G49690 224 / 1e-72 REGULATOR OF AXILLARY MERISTEMS3, myb domain protein 84 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023002 pacid=23146171 polypeptide=Lus10023002 locus=Lus10023002.g ID=Lus10023002.BGIv1.0 annot-version=v1.0 ATGGGGAGATCACCTTGCTGTGACAAGGCCAATGTTAAGAGAGGTCCATGGTCTCCTGAAGAGGATGCAAAGCTCAAAGACTACATACACAAACATGGCA CTGGTGGCAACTGGATTGCTTTCCCTCACAAAGCTGGTCTCAGGAGATGTGGGAAAAGTTGCAGGCTGAGATGGCTTAACTACTTAAGACCAAACATCAA GCATGGGGAATTCTCTGATGATGAAGACAGAATCATCTGCACCCTTTTTGCTAACATTGGAAGCAGGTGGTCAGTAATTGCAGCACAATTGCCAGGAAGG ACTGATAATGATATAAAGAACTACTGGAACACCAAGCTGAAGAAGAAACTCATGGGTTTGCTTCCAAATCCCTCCCATGGAAGATTACCATTTCATCACC CGGCAAATTTCTACCCGCAATCTTCACCATTGTCCAGTTCAGTACTCTCCTATTCAAACAACTCCTCCTCATCACTCTCAGTTGATCCATCATCAATGAC ATCACCTATCAACCCCTTCAAATCAAACCATGGGGATTATAACAGTTCCTTCAACAGTACTAATGCTACGATGCAACGTCAGCAACAACCACATTACCAG CAGCAGGTGAAAGACGGGGTTTTGATGTTTGGGTCAGGAGGAGGAACTACTGAGGCAAGTTGTAGCTCATCAGATGGAAGTTCCAACATTAATGTTCATC ATCATCATTATCGTCGACAGGTCAACGAGTTCGATTACGAAGCAGAACAGCTACAGCAGATGAGTGGTTTCAATCAAATGGAGGATTATGGGTTTGAGGA AATCAAGCAGCTGGTTAGCACAAACAGCTGCTGCAACAATAACAGCTTGTTACTGTTTTGA
AA sequence Show only first row Show all	>Lus10023002 pacid=23146171 polypeptide=Lus10023002 locus=Lus10023002.g ID=Lus10023002.BGIv1.0 annot-version=v1.0 MGRSPCCDKANVKRGPWSPEEDAKLKDYIHKHGTGGNWIAFPHKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLFANIGSRWSVIAAQLPGR TDNDIKNYWNTKLKKKLMGLLPNPSHGRLPFHHPANFYPQSSPLSSSVLSYSNNSSSSLSVDPSSMTSPINPFKSNHGDYNSSFNSTNATMQRQQQPHYQ QQVKDGVLMFGSGGGTTEASCSSSDGSSNINVHHHHYRRQVNEFDYEAEQLQQMSGFNQMEDYGFEEIKQLVSTNSCCNNNSLLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	0	1
AT5G46970			Plant invertase/pectin methyle...		Lus10019498 [exp]	2.0	0.9583
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	2.2	0.9602
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	4.2	0.9578
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036942 [exp]	4.5	0.9503
AT5G42785			unknown protein		Lus10002541 [exp]	4.7	0.9498
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	5.0	0.9572
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	6.0	0.9576
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	6.5	0.9540
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	8.5	0.9560
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10001394 [exp]	8.7	0.9349

Compare expression of checked genes

Lus10023002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.