Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53230 1362 / 0 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 1351 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 1332 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 368 / 2e-115 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 343 / 2e-108 CDC48B cell division cycle 48B (.1) AT3G56690 256 / 1e-72 CIP111 Cam interacting protein 111 (.1) AT1G03000 250 / 4e-71 PEX6 peroxin 6 (.1) AT5G08470 222 / 9e-61 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G45000 207 / 7e-60 AAA-type ATPase family protein (.1.2) AT5G43010 206 / 3e-59 RPT4A regulatory particle triple-A ATPase 4A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021441 [exp] 1361 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 1360 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1354 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 1353 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 1296 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 674 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10018033 [exp] 355 / 1e-112 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10039722 [exp] 356 / 6e-111 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10020255 [exp] 362 / 1e-110 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125500 [exp] 1380 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 1376 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 1321 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 1314 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 1183 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 374 / 1e-117 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 358 / 7e-114 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 250 / 5e-71 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.006G035000 [exp] 248 / 9e-70 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.001G174100 [exp] 219 / 9e-60 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [flax] [poplar] AcetylDC-like PF02359 [flax] [poplar] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [flax] [poplar] Cdc48_2-like PF02933 [flax] [poplar] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10023018 pacid=23146124 polypeptide=Lus10023018 locus=Lus10023018.g ID=Lus10023018.BGIv1.0 annot-version=v1.0 ATGTCAAACCAAGCTGAATCCTCCGACTCTAAGGGAACCAAGAGGGATTTTAGTACCGCCATTTTGGAGCGCAAGAAGGCTGCCAATCGCCTTGTAGTCG ACGAAGCTGTCAACGATGACAATTCCGTCGTCGCTCTCCATCCCGATACTATGGAGAAGCTTCAGCTTTTCCGCGGTGATACCATCCTGATCAAGGGAAA GAAAAGGAAAGATACCATCTGCATTGCCCTCGCTGATGAGACTTGTGATGAGCCAAAGATTAGGATGAACAAGGTTGTGAGGTCGAACCTTAGGGTTAGA CTTGGGGATGTCGTCTCTGTTCATCAATGCCCTGATGTCAAGTATGGAAAACGTGTTCACATTCTGCCCATTGATGACACAATTCAAGGAGTTACTGGAA ATCTGTTTGATGCATACTTGAAACCTTATTTCTTGGAGGCATATCGCCCTGTTAGGAAGGGTGATCTTTTCCTAGTTAGAGGAGGAATGAGGAGCGTGGA ATTCAAGGTTATCGAGACTGATCCAGCAGAGTACTGTGTGGTTGCCCCAGACACAGAGATTTTCTGCGAGGGAGAGCCTGTCCTAAGAGAAGAGGAGAAT AGATTGGATGAGGTTGGTTATGATGATGTTGGTGGGGTTAGAAAGCAAATGGCTCAAATTCGTGAACTGGTGGAGCTTCCTTTGAGGCATCCGCAACTAT TCAAGTCAATTGGTGTGAAGCCACCAAAGGGTATTCTGTTGTATGGACCTCCTGGTTCTGGCAAGACTCTCATTGCCAGAGCCGTGGGCAATGAAACTGG TGCTTTGTTCTTTTGTCTTTATGGATCTGAGGTCGTGGTTGAGAGAAGGATTGTCTCCCAGCTGCTGACGTTGATGGATGGACTGAAATCTCGTGCACAT GTTATTGTCATGGGAGCTACGAACCGTCCCAATAGCATTGACCCTGCTCTTAGGAGATTTGGAAGATTTGACAGGGAGATTGATATTGGCGTCCCAGATG AAGTTGGTCGTTTGGAGGTTCTCCGTATTCATACTAAGAACATGAAACTTGCTGAAGATGTTGATCTCGAAAGAATCTCCAAGGATACGCATGGCTATGT AGGTGCTGACTTGGCTGCTCTCTGCACTGAAGCTGCTCTTCAGTGCATTAGGGAGAAGATGGACGTGATTGACTTGGAAGATGAGACTATTGATGCTGAA ATACTTAATTCCATGGCAGTTTCCAATGAGCACTTCCAAACTGCCCTCGGAACTAGCAACCCATCTGCTTTGCGTGAAACTGTGGTGGAAGTTCCGAATT GCAGCTGGGAAGATATTGGTGGCCTTGAGAACGTTAAGAGGGAACTTCAAGAGACTGTTCAATATCCGGTGGAGCACCCAGAAAAATTTGAGAAATTTGG GATGTCACCATCAAAGGGTGTACTTTTCTATGGACCTCCTGGTTGCGGAAAAACTCTCCTGGCCAAAGCTATTGCCAACGAATGCCAGGCAAATTTCATT AGTGTGAAGGGTCCCGAGTTGCTTACAATGTGGTTTGGTGAAAGTGAGGCCAATGTCAGAGAGATCTTCGACAAGGCTCGTGGTTCTGCTCCTTGTGTGC TCTTCTTCGATGAACTCGATTCCATTGCTACCCAGAGAGGAAGCAGTGTTGGAGATGCTGGTGGTGCTGCAGATAGGGTGTTGAACCAGCTTTTGACAGA GATGGATGGCATGTCCGCGAAGAAGACTGTTTTCATCATCGGGGCAACAAACAGACCGGATATCATAGACCCTGCATTGTTGCGTCCTGGTCGTCTCGAT CAACTGATATACATTCCCCTGCCTGATGATGAGTCTCGTCTTCAAATCTTCAAGGCATGCTTGAGGAAATCACCAGTCGCTAAGGATGTTGACCTCAGGG CTCTTGCTAAGTACACCCAAGGATTCAGTGGTGCTGACATTACTGAGATATGTCAGCGTGCTTGCAAATATGCTATAAGAGAGAACATCGAGAAGGACAT CGAGAGGGAGCGGAGAAGAACAGACAACCCAGAAGCGATGGAGGAAGACGAGGTTGAAGACGAGGTTGCTGAAATCAAGGCTGCGCACTTTGAGGAATCG ATGAAGTATGCTAGAAGAAGTGTGAGTGATGCAGATATCCGCAAGTACCAAGCATTTGCTCAGACACTGCAGCAGTCGAGAGGGTTTGGATCTGAGTTCA GGTTCTCCGAGACTAGCGGTGGAGCTGCTGCTACTGCATCCGACCCATTTGCAACTTCTGCTGCTGCTGATGAAGATGACCTCTATAGTTAA
AA sequence Show only first row Show all	>Lus10023018 pacid=23146124 polypeptide=Lus10023018 locus=Lus10023018.g ID=Lus10023018.BGIv1.0 annot-version=v1.0 MSNQAESSDSKGTKRDFSTAILERKKAANRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTICIALADETCDEPKIRMNKVVRSNLRVR LGDVVSVHQCPDVKYGKRVHILPIDDTIQGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVLREEEN RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVGNETGALFFCLYGSEVVVERRIVSQLLTLMDGLKSRAH VIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAE ILNSMAVSNEHFQTALGTSNPSALRETVVEVPNCSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI SVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD QLIYIPLPDDESRLQIFKACLRKSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRTDNPEAMEEDEVEDEVAEIKAAHFEES MKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSETSGGAAATASDPFATSAAADEDDLYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10023018 [exp]	0	1
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	1.0	0.8996
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10025666 [exp]	4.5	0.8165
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	5.5	0.8590
AT3G08970		TMS1, ATERDJ3A	THERMOSENSITIVE MALE STERILE 1...		Lus10002852 [exp]	7.7	0.8106
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	7.9	0.8242
AT5G35320			unknown protein		Lus10027608 [exp]	8.7	0.8287
AT3G09350		Fes1A	Fes1A (.1.2.3)		Lus10003961 [exp]	9.6	0.8357
AT1G44414			unknown protein		Lus10018166 [exp]	10.2	0.8391
AT5G02490		AtHsp70-2	Heat shock protein 70 (Hsp 70)...		Lus10040304 [exp]	12.4	0.8079
					Lus10035559 [exp]	13.3	0.7583

Compare expression of checked genes

Lus10023018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.