Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 66 / 4e-13 MYB ATMYB113 myb domain protein 113 (.1) AT1G56650 63 / 7e-12 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT5G35550 59 / 1e-10 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT4G38620 58 / 6e-10 MYB AtMYB4 myb domain protein 4 (.1) AT1G22640 57 / 7e-10 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT1G66390 57 / 1e-09 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT2G16720 57 / 1e-09 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT1G66380 54 / 4e-09 MYB ATMYB114 myb domain protein 114 (.1) AT4G09460 55 / 5e-09 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT5G52600 54 / 5e-09 MYB AtMYB82 myb domain protein 82 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028513 [exp] 134 / 2e-38 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10009130 [exp] 133 / 1e-37 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10028514 [exp] 72 / 4e-15 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10009129 [exp] 59 / 2e-10 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10039736 [exp] 58 / 3e-10 AT3G23250 69 / 5e-14 myb domain protein 15 (.1.2) Lus10027189 [exp] 57 / 2e-09 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10014129 [exp] 57 / 3e-09 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10000411 [exp] 55 / 9e-09 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10021428 [exp] 55 / 9e-09 AT5G57620 248 / 2e-80 myb domain protein 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126000 [exp] 77 / 5e-17 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.017G125600 [exp] 73 / 3e-15 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G125700 [exp] 72 / 4e-15 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125900 [exp] 70 / 3e-14 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G125800 [exp] 69 / 5e-14 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.006G066400 [exp] 61 / 4e-11 AT5G52600 193 / 3e-62 myb domain protein 82 (.1) Potri.004G088100 [exp] 58 / 3e-10 AT4G09460 227 / 5e-75 myb domain protein 6 (.1) Potri.017G128900 [exp] 58 / 4e-10 AT4G09460 222 / 6e-73 myb domain protein 6 (.1) Potri.005G112000 [exp] 57 / 1e-09 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.013G130900 [exp] 57 / 2e-09 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023027 pacid=23170287 polypeptide=Lus10023027 locus=Lus10023027.g ID=Lus10023027.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGAGGAGGATCAGAGATGGTCGTGAAGAGTGTGGGATTAAGGAAAGGGGCTTGGAGCCAAGATGAGGATAAGCTGCTTAGAAGGTGGGCTT TTATTTCGGGAAGGTTACCGGGGAGAACAGCCAACGACGTCAAAAACTATTGGAACACGCACCAAAAGAAATTGGTAACGAAGACGTTCCGGTTCAAACC GGAACACATTATTCATCACAATAGTAGTAGCAAGGTACGATCAATGCAAATAACAAAGACCAACATCATAAAGCCACGACCTTGGACCTTCTCATCAAAA AGTTTCACTTGGGCAAGAAAAACTACCACAGAGACCCCAAATCCCATCATTGTTACAAATAAGCCACTCGTAGTTATAAATAGTGACGAGTCGATAAAGC GAGGTGATGATCATCACACGAGTTCCGGGGAAGGAGAAATCAGCACGTGGGTCGACTCGCTGAAAAGGCTCTTGGACGACGAAGTCGGCGTTAATGATAA TGATAACGAGAAGCAGCCGGTGGAGACAAACGAAAACCAGCCGTTGGAGCCAACCAGTAATGATGATTATGATTCAAGTTTATGGACTGATATCGATATT CAGCATCTTTTAGGTGATTATAGCGGTAATTTAATTTAG
AA sequence Show only first row Show all	>Lus10023027 pacid=23170287 polypeptide=Lus10023027 locus=Lus10023027.g ID=Lus10023027.BGIv1.0 annot-version=v1.0 MEAGGGSEMVVKSVGLRKGAWSQDEDKLLRRWAFISGRLPGRTANDVKNYWNTHQKKLVTKTFRFKPEHIIHHNSSSKVRSMQITKTNIIKPRPWTFSSK SFTWARKTTTETPNPIIVTNKPLVVINSDESIKRGDDHHTSSGEGEISTWVDSLKRLLDDEVGVNDNDNEKQPVETNENQPLEPTSNDDYDSSLWTDIDI QHLLGDYSGNLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10023027 [exp]	0	1
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Lus10011597 [exp]	6.0	0.8280
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	6.5	0.8252
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	10.1	0.8260
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003897 [exp]	11.0	0.7513
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10001395 [exp]	15.9	0.7884
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016441 [exp]	16.0	0.8200
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	16.1	0.8080
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016440 [exp]	18.8	0.8117
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	20.5	0.7902
					Lus10016101 [exp]	21.6	0.7871

Compare expression of checked genes

Lus10023027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.