Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28960 263 / 2e-85 Transmembrane amino acid transporter family protein (.1) AT5G15240 254 / 1e-81 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 242 / 1e-75 Transmembrane amino acid transporter family protein (.1) AT5G02180 241 / 4e-75 Transmembrane amino acid transporter family protein (.1) AT2G41190 237 / 1e-73 Transmembrane amino acid transporter family protein (.1) AT5G02170 234 / 2e-72 Transmembrane amino acid transporter family protein (.1.2) AT3G09330 229 / 1e-70 Transmembrane amino acid transporter family protein (.1) AT3G09340 226 / 2e-69 Transmembrane amino acid transporter family protein (.1) AT3G54830 223 / 3e-68 Transmembrane amino acid transporter family protein (.1) AT5G16740 159 / 4e-45 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012824 [exp] 379 / 2e-130 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 359 / 2e-122 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 260 / 1e-83 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 256 / 3e-82 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 219 / 2e-66 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 207 / 2e-61 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 207 / 4e-61 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10010457 [exp] 207 / 1e-59 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10035738 [exp] 153 / 1e-42 AT5G16740 503 / 3e-177 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086500 [exp] 351 / 1e-119 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 348 / 1e-118 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 271 / 4e-88 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 266 / 6e-86 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.010G226000 [exp] 248 / 7e-78 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 244 / 1e-76 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.018G099700 [exp] 228 / 1e-71 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 231 / 2e-71 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 186 / 5e-55 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.014G146700 [exp] 137 / 1e-36 AT5G16740 430 / 3e-148 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10023029 pacid=23170364 polypeptide=Lus10023029 locus=Lus10023029.g ID=Lus10023029.BGIv1.0 annot-version=v1.0 ATGCAGATAAAGACGTACCCAGACATCGGGGAGTTAGCATTCGGAGCCAAAGGAAGAGCCGTCGTGTCGGTTTGCCTGTACCTAACGCTCTACTTGCTAG CCGTGGAGTTCCTAATACTTGAAGGGGACAATTTAGACAAGCTTTTCCCCGACAGCTTTAATTACACAATCGGCGGCCGACTGAAGATCCACGGGAAGCA AGCGTTCGTCTTGTTGACCGCTCTCGTGATCCTCCCGACGACGTGGCTCAGAAGCTTGGGTGTCATTGCTTACGTGTCACTAGGTGGGGTTGTGGCTTGC TTTATATTGGCTGTCTGTGTTATGTGGATTGGAACGGTGGATGGTATTGGGTTTCGTGAAGATAACGGCGGCCGTCATCTTTTGAGACTGCAGACTTTGC CTACTGCTGTGAGTTTGTTCACCTTTAGCTTTGCTGGTCACTATACTTTCCCGACGCTTTGCAACTCCATGGCTGATAGGACCCAATTGTCTAAGGTGTT GCTCATCACCTTCGCGACAACCTTGCTCACCTACGGATGGATAGCAATGGCATCATACCTTATGTACGGCGAGAATCTCAAGTCTCCACTGACACTAAAC TTCCCCGTTGCCAAAATAAGCTCACAAGTCGCGATATACACAACTTTAGTAAATCCAGTGACCAAATACGCAATAGTGATAACTCCAATTGCAACTGCCT TTGAAGAAAGATACCTCGTTTTACAAAGCAGTAAACCTCTCAACATCCTAATGAGGACTTCGATCTTGGTCAGCACAGTTATCATAGCAATAGCTGTCCC GTTCTTCGGCTACATCATGGCCTTCATTGGATCGGCGTTGAGCGTGATCGGGACCATATTGCTGCCTTGCTTATGCTACATGCGGATTCATTATTATAAG GAGAATAGTAGATCATTTGTTGGGTTGGAGTTGTTGGTGATTGTGGGGATCATGGTTGTTGGTGTTCTTGTTGGCGTAGTTGGAACTTGTACCTCTGTTA AACAAATTGTTCAACTTCTCTGA
AA sequence Show only first row Show all	>Lus10023029 pacid=23170364 polypeptide=Lus10023029 locus=Lus10023029.g ID=Lus10023029.BGIv1.0 annot-version=v1.0 MQIKTYPDIGELAFGAKGRAVVSVCLYLTLYLLAVEFLILEGDNLDKLFPDSFNYTIGGRLKIHGKQAFVLLTALVILPTTWLRSLGVIAYVSLGGVVAC FILAVCVMWIGTVDGIGFREDNGGRHLLRLQTLPTAVSLFTFSFAGHYTFPTLCNSMADRTQLSKVLLITFATTLLTYGWIAMASYLMYGENLKSPLTLN FPVAKISSQVAIYTTLVNPVTKYAIVITPIATAFEERYLVLQSSKPLNILMRTSILVSTVIIAIAVPFFGYIMAFIGSALSVIGTILLPCLCYMRIHYYK ENSRSFVGLELLVIVGIMVVGVLVGVVGTCTSVKQIVQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28960			Transmembrane amino acid trans...		Lus10023029 [exp]	0	1
					Lus10010271 [exp]	3.5	0.9276
					Lus10010270 [exp]	4.2	0.9321
AT1G11050			Protein kinase superfamily pro...		Lus10028553 [exp]	4.5	0.9277
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10040300 [exp]	4.9	0.9030
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027514 [exp]	5.8	0.8779
AT3G05670			RING/U-box protein (.1)		Lus10007973 [exp]	7.4	0.9112
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030463 [exp]	9.6	0.8641
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042741 [exp]	12.0	0.8640
AT4G05230			Ubiquitin-like superfamily pro...		Lus10007641 [exp]	12.2	0.9076
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	12.2	0.9136

Compare expression of checked genes

Lus10023029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.