Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 411 / 4e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 365 / 4e-107 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45200 355 / 9e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 342 / 1e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 345 / 2e-101 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G51630 347 / 6e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G69550 345 / 3e-99 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 338 / 2e-97 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 335 / 2e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 333 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008221 [exp] 1287 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028058 [exp] 961 / 0 AT4G12010 367 / 3e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10028060 [exp] 941 / 0 AT4G12010 363 / 1e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008320 [exp] 929 / 0 AT4G12010 402 / 1e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 914 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 879 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 864 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 847 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 844 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 549 / 1e-176 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 540 / 3e-173 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 504 / 1e-158 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 481 / 4e-149 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 473 / 4e-146 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 474 / 3e-145 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 460 / 1e-142 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 446 / 3e-137 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 447 / 4e-135 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 447 / 5e-135 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10023051 pacid=23170335 polypeptide=Lus10023051 locus=Lus10023051.g ID=Lus10023051.BGIv1.0 annot-version=v1.0 ATGGCCTCCTCGTCATCTTCCTCCGCCGTAAGACCTTCTTCTTCTTCTTCTTCTTCTTCTCCATACACCGGGAAATGGGAATACGACGTCTTCTTGTGCT TCAGAGGCGACACCCGCCTCAGTTTCATGAGCCACGTCAGAGAAGCTTTGTCGAAGGAGAAGATCCGCTTCTTCGTAGACACCATGCTCACTGTAACGGA GGACATCGGCGAGCTCCTCAACGTCCTCGAGAGAACAGCGGTCTCTGTTGTGATTTTCTCGGAGAAGTTTGCAGATTCGAGCTGGTGCCTAGAAGAGGTT GACACCATAGCTCGAAGTGTGGCCGAGTTTGGCCACAAGTCGCTCCCTGTCTTCTATAAGGTGGATTGGACCGCTGTGGTGGAGGATTCTGGAAGTTACG CTGAAATGATTGCCAAACTTGGAGAATTCTGTGAAGATTGCAAGAAGCGATGTAGGGGTGCTTTGAAAGCTGTGGCTGGTAAGACTGGTCGCACCTCCGA TGCCATCCCGGACGACGCCGAATTAGTGAAACGGATTATGGAAGATGTTCTGAAGACACTAGCAGCCATGTCATCAGGTATGCCATTCAACAATTTGGTT GGTATCGATGCACGTGTTGAGCAGGTTGATCAACGATTAGCCATGAACAGAATGGATGTCAATCGTATTGTTGGGCTTCATGGAATGGGTGGGATAGGGA AAACAACTCTAGCCAGAGCTTGCTATGATAAACATAGATATTCAGCAAAAGGGACCAAGTTCCATTTTGTTGAGAGAATTGGTCAAAATAGCGATAAGCA TTATGGGGTTGAAGGACTGGTTCAAGAGCTCTATTCAGCATTGTTGTCAGAGAACAACCTTAGATTCGAAGATATTAATTTCAGTTATCGAAGGGAACGT CTTTTACGGTTAAGAGTGTTTATCGTTCTCGATGATGTACGGACTCCCTTTCAGTTAGAGCAACTGCTTCTGGGAGATGCTTTGAATCCTACAAGAATCT TTGCTGCGGGGAGCAGAATCATCGTGACCACGAGAAACCAGAGAGTGCTTGAATACACAAAGGCGGAGGTACTCCCTGTTAAAGGTCTAGATGATCGTGA ATCTCTTCAACTCTTTAAATTGCATTGTTCCGAACCAAGCTCTCCCCTAGATGATCGGATTGATCTGTCTCGTTGTGTGTTATCATACTGTAAGGGAAAC CCCTTGGCCCTTAAAGTTTTAGGAGGGACACTGTCATCCAAGGGTAATGAGTATTGGAAGAGCTTCTTGCGCAAATTGAGCCATATCCAAGAACCAGAGA TTCATGATGTTCTTAGGATAAGCTACAATGAGTTGGGAGAGGACGACAAGCGATTCTTCCTAGACATTGCTTGCTCCTTCCATGAGATCATGAAATCCTT ACTGATTAGATATTTGGAAACCAGTTACATCTCTGCAGTTAGCAGAGTACAAGATTTAATTGAGAAGTCCATGTTAATTTGTCAGCCTACTAAGAAAAAC GGCGAATTTATTCTGGTGCATGATTTGTTAAGAGAAATGGCTTGGAATATTGTCAATGAGGAAGCAGATATTGGAAAACGCAGCAGGTTGAAAAATCATG ATGATATTCACAATTTGTTGACAGTTCGAAAGGGAGAAAGAGCAACCCTTGGGATAAGTTTGAACCTTTTTAGGCTTGAAAAAATGAATTTGAAAGCCAA TGCCTTTGAGGGGATGGACTCTCTCAGATGGATTGAAATCTACTGGTCAAACAACGGATGTCATCACCCAGGTCATCAGAAGATCCTTCTTTCAGATGGA GGCCTTAACTATCTTCCTGATGAGTTAAGGGGTCTGAATTGGGATCAATTCCCTGCAACTTCTCTGCCACAGGGATTTTCTCCCAAAAAAATCTTTAACA TTATCATAACCAATAGCCCAATTCAGAAATGCTGGGAACTACAAGATCAGCAGCCTAAGCTTGAGTATCTGGTGGTGCTTAACCTCTCCCACTGTGAAAA TTTGAGTACGATCCCTAACCTGTGGAAGGCTTCGAAACTGGAGCACATTATACTCCAGGGATGTAAAAGCTTAACTGAACTACCTGCAAGCATTCAGGCT CTTGTCAAGTTGGTACGGTTGGATGCCAGAGATTGTCAACGTCTACAGTGCATTCCGGCCAGGCTCAACTCAAAGTTCCTCAAGCAGCTTCTGTTGTCCA ATTGTCCCAAGCTCACCCGATGTCCGGAGATCAGTTCAGCAGTGTTGGAGGATTTGGATTTAGATGGGACACCCATCAGTACGGTGCCGAATGCAATATC CAAGGTCAAGGAAGGTGGAATGGTAAGTCTCTTTGGTGAAAATGTCACAGATATTCCTCGAATTACGTCGAGCTTAGACCTGCTTCGTCTTTGCCATACT GCAATAACAGAGATGGAATTCGATACTCTTAAGACTTCTGATTCACCGAAATTTGATCGACTCCACTTGATGGACAACACCCATCTGAAGTCTCTACCAA AGTGTATCTGGAAGATGGTCTCTGTTGAACTTATTGTTGAGCGTTGTCCTTTGATTGAAAGTTTGCCAGAGATCTCAGAGCCTTCAAATTTAACGGGGCT TCGCTTGGCTGGCTGTGCTAGGATCACCAATGTTTCTTGCATTTCCAATATGAAGTTTTTGGACATTCTCGTTCTTTCTGGGACGGGTATAAAGTCATTA CCTTCTTGTATCGAGGAATTGGATCAGCTCTCTTATGTAGATCTATCCAACTGTGAAAGCCTAGAGTCTATTCCAAATACCATTCAAAGACTTGCTAACT TATCCGAATTGTTGTTGACGGGCTGTAAAAGTATGCGATATTTGCCGGAACTCCCACCAAATCTTAAGATTTTGAAGGCAAATGAGTGTGGTTCGTTACA AGCCCTGCCAAGCAACATTGGAAATCTGAGTTTGCAGCACTTGAGGCTTGATGGTTGCCCGCAACTGGACAGGAATTCACTCGGTGAACTCACGACCAAT TTTCCTGATCGAGTCTTGTCTCGACACTCTCAGATGGGTTTTCACTATTCTGGAAGTGAGCTACCAGAATGGTATCAGTTCAGCTCAGAACGTGTAAAAG AAGAATGTAATCGTGTGACTCTGGAGCTACCTGTGGACTGTACAGGGCTAAAGGAGGTTGCATTTGGCGTTGTGTATTCCTTGGACCAACCCTGTGGTTC CATGTCTATCCTATGTGGTTGCTTTGTTGAATATGAGATGGTCACACATTGGAGATCTTTATCCTGGCAGTTTCACTGCCTTGACAACTCAGACCGTGTT TACCTGTGGTCCAGTAACGCATTTGGCATATCAAACAAAGATGACGACGAAGATGCTTGGTATGAGAAGTATGCTGGATTCACTGTTTCATTTGTGTTTT TTGCTGATGTTGATCGTACTGGATTCCACGACGTGAAAAAATGTGACGTCGCTCTACTTTACTGA
AA sequence Show only first row Show all	>Lus10023051 pacid=23170335 polypeptide=Lus10023051 locus=Lus10023051.g ID=Lus10023051.BGIv1.0 annot-version=v1.0 MASSSSSSAVRPSSSSSSSSPYTGKWEYDVFLCFRGDTRLSFMSHVREALSKEKIRFFVDTMLTVTEDIGELLNVLERTAVSVVIFSEKFADSSWCLEEV DTIARSVAEFGHKSLPVFYKVDWTAVVEDSGSYAEMIAKLGEFCEDCKKRCRGALKAVAGKTGRTSDAIPDDAELVKRIMEDVLKTLAAMSSGMPFNNLV GIDARVEQVDQRLAMNRMDVNRIVGLHGMGGIGKTTLARACYDKHRYSAKGTKFHFVERIGQNSDKHYGVEGLVQELYSALLSENNLRFEDINFSYRRER LLRLRVFIVLDDVRTPFQLEQLLLGDALNPTRIFAAGSRIIVTTRNQRVLEYTKAEVLPVKGLDDRESLQLFKLHCSEPSSPLDDRIDLSRCVLSYCKGN PLALKVLGGTLSSKGNEYWKSFLRKLSHIQEPEIHDVLRISYNELGEDDKRFFLDIACSFHEIMKSLLIRYLETSYISAVSRVQDLIEKSMLICQPTKKN GEFILVHDLLREMAWNIVNEEADIGKRSRLKNHDDIHNLLTVRKGERATLGISLNLFRLEKMNLKANAFEGMDSLRWIEIYWSNNGCHHPGHQKILLSDG GLNYLPDELRGLNWDQFPATSLPQGFSPKKIFNIIITNSPIQKCWELQDQQPKLEYLVVLNLSHCENLSTIPNLWKASKLEHIILQGCKSLTELPASIQA LVKLVRLDARDCQRLQCIPARLNSKFLKQLLLSNCPKLTRCPEISSAVLEDLDLDGTPISTVPNAISKVKEGGMVSLFGENVTDIPRITSSLDLLRLCHT AITEMEFDTLKTSDSPKFDRLHLMDNTHLKSLPKCIWKMVSVELIVERCPLIESLPEISEPSNLTGLRLAGCARITNVSCISNMKFLDILVLSGTGIKSL PSCIEELDQLSYVDLSNCESLESIPNTIQRLANLSELLLTGCKSMRYLPELPPNLKILKANECGSLQALPSNIGNLSLQHLRLDGCPQLDRNSLGELTTN FPDRVLSRHSQMGFHYSGSELPEWYQFSSERVKEECNRVTLELPVDCTGLKEVAFGVVYSLDQPCGSMSILCGCFVEYEMVTHWRSLSWQFHCLDNSDRV YLWSSNAFGISNKDDDEDAWYEKYAGFTVSFVFFADVDRTGFHDVKKCDVALLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10023051 [exp]	0	1
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	2.4	0.8740
					Lus10040816 [exp]	3.5	0.8422
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	9.5	0.8156
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	10.2	0.8154
AT5G45190			Cyclin family protein (.1.2)		Lus10021927 [exp]	11.1	0.8567
AT1G22930			T-complex protein 11 (.1.2)		Lus10001363 [exp]	12.6	0.8328
AT1G03080			kinase interacting (KIP1-like)...		Lus10006896 [exp]	17.1	0.7826
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	17.9	0.8312
AT5G54520			Transducin/WD40 repeat-like su...		Lus10014805 [exp]	19.2	0.8107
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	21.6	0.7772

Compare expression of checked genes

Lus10023051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.