Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27180 160 / 2e-42 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 155 / 7e-41 transmembrane receptors;ATP binding (.1.2) AT5G36930 154 / 2e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 147 / 5e-38 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G45050 119 / 2e-28 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G41750 117 / 4e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G51560 117 / 8e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 116 / 9e-28 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 115 / 2e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 115 / 3e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033953 [exp] 745 / 0 AT5G36930 347 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004747 [exp] 533 / 5e-180 AT5G36930 342 / 3e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10012311 [exp] 481 / 7e-159 AT5G36930 354 / 6e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10040576 [exp] 453 / 3e-148 AT1G27180 355 / 3e-103 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007831 [exp] 445 / 2e-146 AT1G27180 332 / 7e-96 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007829 [exp] 439 / 1e-143 AT5G36930 330 / 2e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007825 [exp] 436 / 2e-142 AT5G36930 318 / 2e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007828 [exp] 432 / 8e-142 AT5G36930 319 / 7e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 431 / 3e-140 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 201 / 1e-56 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 183 / 3e-50 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 182 / 3e-50 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001600 [exp] 181 / 9e-50 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G142600 [exp] 179 / 3e-49 AT5G36930 535 / 5e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 179 / 6e-49 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 179 / 1e-48 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 177 / 1e-48 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018396 [exp] 173 / 1e-48 AT5G36930 374 / 5e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 177 / 4e-48 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10023093 pacid=23170416 polypeptide=Lus10023093 locus=Lus10023093.g ID=Lus10023093.BGIv1.0 annot-version=v1.0 ATGGACTCAGTTGGATCAGTGGTTGAAGCAAAGAAAAAAATACGAGAGAGGGTGACTCAGTTCAAGATCCTTGTGGTTCTCGATGATATACACGAAAAGT TCAATTTTCAGGATGTCTTGGGAAGTTTGAAGAATTTTGATCCAGAAAGTCGTTTTATCGTAACGTCGAGAGATCTAAAGGTCATAAGGAGGTTAAGCGA AGATCAAAGCAAATTGTACGAAGTTTCAGTAATGAGTCCTAGTCGTTCGCTTCAATTATTTTGCAAGCATGCATTTAGAAAGGATTTTCCACCGTCAGGT TTTGAGGCTTTATCAGAAAATATCGCATCCACCACAGGAGGACTTCCATGGACACTTGCGGTTATAGGGTCATTTCTTTTCCGAGAAGAAGAAGTTGTCT GGAAAGCCAAATTGGAGCAGTTACGGCAAATGCCAGAGAAAGGTGTAATTGATAGGTTAATAATTAGCTACGACTGTTTAAACTACGAAGCGCAACAAAT ATTCCTAGATATTGCTTGCTTCCACATCGGAGAGGATAAAGAAATGGTTTCTTACATGTGGAGCGATTGCAAATTTTGTCCCGTCATTAATGTCAATGTT CTTGTTCAAAGATCTCTACTCAAAATTGGGGATCATAATGAGTTCCTGATGCACGATCAACTAAGAGATATGGATAGAGAAATTATCCGCAAAGAAAATA TCGAACATCCAGAAATGAGAAGCAGAATATGGTTAGAGGAGGAAGCTAACAATGTTTTAGTTAACAACAAGGGAACAAATCAAGTAAGAGCCATGAGAGC ATACTCAAAAAGTCATGCTTTAAATTTCAGAAGTCATGCTTTAGGTTTCAGAAATGGATGTTTTACGAATATGACAGAATTGAGATATTTTGAGGGGAAA GACACGGAGCTAATCGGAGATTTCAGTCATGTTCTTCCTAATTTAAAGTGGATTCATTTTGGAGTTGCTGATATCTCGAAATATAGTTATCCAATGCGCT CTAGGGCGAGCTTCAATATGAAGAACTTGATCATATTTGATGAGGCAAATAAGTTGAAAGTTCTAATTCTTGGTCCCTGTGACATGATGAGAAAACTTCC AGAATTTCCAGAATCTAGAAGCCTAGAGATACTGTCGATTTCGTGGTTTGAGAATCGCAAGGAAGACCTCGAAATTGGGATGTTGTGTAACCTTAAAGTG TTACGATTAAGTTGGTGTAAGCTAGGAACGATCAAAGGTGGCACCATTGGGACGATGATGCTCTATCTCTGCATCATCACAGTTTCAGAAGAGCGATTGC CGATATAG
AA sequence Show only first row Show all	>Lus10023093 pacid=23170416 polypeptide=Lus10023093 locus=Lus10023093.g ID=Lus10023093.BGIv1.0 annot-version=v1.0 MDSVGSVVEAKKKIRERVTQFKILVVLDDIHEKFNFQDVLGSLKNFDPESRFIVTSRDLKVIRRLSEDQSKLYEVSVMSPSRSLQLFCKHAFRKDFPPSG FEALSENIASTTGGLPWTLAVIGSFLFREEEVVWKAKLEQLRQMPEKGVIDRLIISYDCLNYEAQQIFLDIACFHIGEDKEMVSYMWSDCKFCPVINVNV LVQRSLLKIGDHNEFLMHDQLRDMDREIIRKENIEHPEMRSRIWLEEEANNVLVNNKGTNQVRAMRAYSKSHALNFRSHALGFRNGCFTNMTELRYFEGK DTELIGDFSHVLPNLKWIHFGVADISKYSYPMRSRASFNMKNLIIFDEANKLKVLILGPCDMMRKLPEFPESRSLEILSISWFENRKEDLEIGMLCNLKV LRLSWCKLGTIKGGTIGTMMLYLCIITVSEERLPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	0	1
					Lus10023092 [exp]	1.0	0.8882
					Lus10039327 [exp]	4.2	0.8117
					Lus10010597 [exp]	4.5	0.8166
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	4.5	0.8279
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	5.5	0.8262
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10003378 [exp]	9.9	0.7846
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	10.2	0.8126
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	10.2	0.8093
AT5G21280			hydroxyproline-rich glycoprote...		Lus10038083 [exp]	10.7	0.7081
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	10.8	0.8044

Compare expression of checked genes

Lus10023093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.