Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80350 842 / 0 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 293 / 9e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G27600 266 / 1e-83 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G27120 260 / 7e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G45500 244 / 1e-74 AAA-type ATPase family protein (.1.2) AT3G19740 226 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 214 / 3e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 211 / 2e-59 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 208 / 1e-58 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 207 / 3e-58 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011477 [exp] 983 / 0 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 290 / 5e-93 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023310 [exp] 284 / 2e-88 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019537 [exp] 272 / 6e-86 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 272 / 8e-86 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 259 / 4e-80 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 254 / 7e-79 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10038001 [exp] 248 / 3e-76 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 247 / 9e-76 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G057800 [exp] 848 / 0 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G176900 [exp] 829 / 0 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 297 / 5e-96 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G065100 [exp] 285 / 4e-91 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G144300 [exp] 274 / 9e-87 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 273 / 4e-86 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 270 / 6e-85 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 267 / 5e-84 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 263 / 2e-82 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G331200 [exp] 256 / 2e-77 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF09336 [flax] [poplar] Vps4_C Vps4 C terminal oligomerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10023115 pacid=23170418 polypeptide=Lus10023115 locus=Lus10023115.g ID=Lus10023115.BGIv1.0 annot-version=v1.0 ATGGTGGGAACATCGCTAGCTGGAGTGCAAGACCATTTGAAATTAGCAAGGGAGTACGCCCTTGAAGGCCTCTACGACACTGCCATCATCTTCTTCGATG GCGCCATTGCTCAGATCAACAAGCACCTGAACTCACTTGACGACCCTTTACTTCGCACGAAATGGATGAACGTCAAGAGGGCAATCTCGGAGGAGACGGA AGTTGTGAAGCAGTTGGATGTGGAAAGAAGGTCATTTAAGGAAGCTCCTGCTGCTACACGACGTGCTGCTTCCCCTCCGATTAATACGAAATCGTCATTC GTGTTCCAACCTCTAGACGAGTATCCCGCTTCTTCTTCCAATGCTTCTTCTTTTGACGATCCTGACGTATGGAGGCCACCGAGTCGAGACAATGCCAGTA GGAGACCCGGTAGAGCTGGCCAAGTGGGAATGAGGAAGTCGCCACAGGATGGAGCTTGGGCGCGCGGTGGTTCGACGAAAGCTGGACCAACTGGCCGTGG AGGAAAGGCCACTACGGCTTCTAGTAAGGTGAATACGGGAATTCGGTCTTCAATTGCTGGAAAGAAGACCACTGCTGCAGCTGGAAAGTCTAGCAAGCCA GATTCAATTAATGGCGATGTTGATGATGATAAACCCAAGAAGCCTCAATATGAGGGGCCTGATGCAGACTTAGCCGCAATGCTTGAAAGGGATGTCCTAG AAACAACACCTGGAGTTAGATGGGATGATGTCGCTGGGCTTAGTGAAGCAAAAAGGCTTCTGGAAGAAGCTGTAGTCCTTCCTTTGTGGATGCCTGAATA TTTCCAGGGCATTAGAAGACCCTGGAAAGGTGTTCTTATGTTTGGACCTCCCGGTACCGGAAAGACTCTACTTGCCAAAGCTGTTGCTACCGAATGCGGT ACCACGTTTTTCAATGTTTCATCTGCTACTTTGGCTTCCAAATGGCGCGGTGAGAGCGAGCGTATGGTCCGATGCTTGTTTGATCTCGCACGTGCTTATG CACCCAGTACCATTTTCATCGACGAGATCGATTCCTTGTGCAATGCCAGAGGTGCTTCAGGGGAGCACGAGTCCTCGAGACGAGTGAAATCCGAGCTTCT AGTTCAAGTTGATGGTGTAAGCAATAGTGCCACGAATGAAGACGGAACCAAGAAACTAGTAATGGTTCTCGCAGCTACTAATTTCCCATGGGACATAGAT GAAGCTCTTAGGAGGAGATTGGAGAAGCGTATATATATCCCGCTTCCGAGTTTCGAAAGTCGCAGGGAGCTTATCAAGATCAACTTGAAAACTGTAGAGA TGGCTGCTGATGTGGACATCGATGATGTGGCGCGTCGGACAGAGGGGTACAGTGGAGACGATCTGACGAATGTCTGCCGCGATGCCTCCCTGAACGGCAT GAGGCGCAAGATAGCCGGGAAGACGAGAGACGAGATCAAGAACATGTCCAAGGACGAGATCTCGAATGATCCGGTCGCCATGTGTGATTTCGAGGAGGCC ATCAAGAAGGTCCAACCCAGTGTCTCTCAAGCCGATATTGAGAAGCATGAGAAATGGTTTAATGAGTTTGGTTCGGCTTAA
AA sequence Show only first row Show all	>Lus10023115 pacid=23170418 polypeptide=Lus10023115 locus=Lus10023115.g ID=Lus10023115.BGIv1.0 annot-version=v1.0 MVGTSLAGVQDHLKLAREYALEGLYDTAIIFFDGAIAQINKHLNSLDDPLLRTKWMNVKRAISEETEVVKQLDVERRSFKEAPAATRRAASPPINTKSSF VFQPLDEYPASSSNASSFDDPDVWRPPSRDNASRRPGRAGQVGMRKSPQDGAWARGGSTKAGPTGRGGKATTASSKVNTGIRSSIAGKKTTAAAGKSSKP DSINGDVDDDKPKKPQYEGPDADLAAMLERDVLETTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECG TTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVSNSATNEDGTKKLVMVLAATNFPWDID EALRRRLEKRIYIPLPSFESRRELIKINLKTVEMAADVDIDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISNDPVAMCDFEEA IKKVQPSVSQADIEKHEKWFNEFGSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	0	1
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	1.0	0.9259
AT5G64970			Mitochondrial substrate carrie...		Lus10014334 [exp]	2.4	0.8934
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	2.8	0.8993
AT5G52540			Protein of unknown function (D...		Lus10027508 [exp]	3.2	0.8849
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	4.7	0.8505
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	6.7	0.8742
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	7.2	0.8714
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10003873 [exp]	7.5	0.8745
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	7.7	0.8717
AT4G21700			Protein of unknown function (D...		Lus10005493 [exp]	8.0	0.8874

Compare expression of checked genes

Lus10023115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.