Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08470 1113 / 0 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G53230 270 / 1e-76 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 269 / 3e-76 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 254 / 4e-71 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 242 / 7e-67 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 229 / 4e-64 CDC48B cell division cycle 48B (.1) AT1G03000 228 / 1e-61 PEX6 peroxin 6 (.1) AT3G56690 222 / 2e-59 CIP111 Cam interacting protein 111 (.1) AT5G19990 165 / 9e-44 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 164 / 1e-43 RPT6A AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011485 [exp] 1989 / 0 AT5G08470 1150 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Lus10037385 [exp] 266 / 2e-75 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 265 / 1e-74 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 253 / 1e-70 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 253 / 1e-70 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 251 / 4e-70 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 235 / 2e-66 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 238 / 1e-65 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10018033 [exp] 234 / 3e-65 AT2G03670 813 / 0.0 cell division cycle 48B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G174100 [exp] 1384 / 0 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.012G088200 [exp] 268 / 6e-76 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 265 / 5e-75 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 265 / 8e-75 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 264 / 2e-74 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 262 / 6e-74 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 251 / 2e-71 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 233 / 3e-63 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.013G151600 [exp] 225 / 4e-61 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.006G035000 [exp] 207 / 2e-54 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF09262 [flax] [poplar] PEX-1N Peroxisome biogenesis factor 1, N-terminal CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10023123 pacid=23170277 polypeptide=Lus10023123 locus=Lus10023123.g ID=Lus10023123.BGIv1.0 annot-version=v1.0 ATGGAGTTCGAAGTATGCCATGTCTCTGGCGCAGAGAGTTGCTTTGTTTCCCTTCCATTACAACTCATCCAGACTTTGGATTCGCTCCGGCCTTCTCTTC TTCCTCAGCCTCAGCTGCTCGTACTTGAGCTCCGCTCGTTGACCTCCACCGCTGACCATCATAGTTGGACAGTCTCCTGGTCTGGTGCTACTTCCTCTTC TTCCGCTATTGAGATTGGTAGGCACTTTGCAGAGTGCATTTCGTTGCTTGATCACTCGAGAGTTCGAGTTAAAGTGGTTTCAAATGTGGAGCATGCTGAA CGAGTGACAGTGGAGCCTGATACTGAAGACGACTGGGAAGTTATGGAGCTCAAAGCAGAATTTGCCGAGGCATCCATGTTAAGCCAGGTCAAAATCGTTA AAGAGGGAATGAGATTTCCTTTGTGGTTACATGGCCATTCTGTTGTTACCTTCTGTGTGGTTTCAACACTTCCCAAAAAAGCAGTGGTTCAACTTGGTCA AGATACAGAAGTAGAAGTTGCTCCTAAGATACGCCAAAAGCTTGTGAATAAATCAGATGCCTCTGTGCAGTCATCTGATAAGCAGCACAATGTGAAGGAG GCATTGCTGCGAATTCAAGATTCAGATAGAAGATTGTTTCAACGATGTAATGTCAAAGGTGTTGATTTGGAGGTTGCTCTTACCACTGTTGCTTATATCC ACCCGGAAACGGCTAAATACTTTTTGTTTGAGTCTCTTCATTTGGTAGTTCTTATTCCAAAATTCTCATCAAGAGAGAAGGTAGACAACGAGGGATCGAG AGTGAAAAGCACTTCAGAGAAGGAAGTATCTCGTCGAGCGATTATCCGACTTGTATTTTCAGACTCTGTGTCCAAAGGGCATCTGATGATAGCTGAGTCT CTTCGTTTAAGCTTAAGAACTGGTCTTCATTCATGGGTTTACGTGAAAGAATATTATGGTGGTCTCAGGGAGGATATTTCATTGCTCTCACTTTCTCCCT GCAAGATTAAGACGATGGGAAAGGACAGGTCCGTGGGAAAATTCAGCATGGAAGGGCTTAGTAGCCATAGAAGGGCGAAGCTGCAAATGATGATTTCAAA AAGTACTCCAGGGGAAGACTTAGATGAAACAGATAGTCTTATGCATGGCGACTTAATGGCCTCTCTTTTGTCTGATTTCCCTCATATAGAAAGTGCAGAG GGGATGCATAGATCTGATAGTACAAAGACATTAAGCAGACTTCTTCATGCTTGGCTTGGTGCTCAAGTTGAAGCAATTGCTTCAGCTTCGGGTGTAGAAG TTAATTCGTTAACGTTAGGGAAGGAGACTGTAATACACTTTGAACTGAAAGGAGTTGATGATGGGACAGGAAGAAAATCTGATTCTACTGCCGTTTTACA AGATAAGATTGGTGAAGTGCCACTTACATTCCTGTATCTGCTGACAGCTCCAGAGGATTCTCCACAAGAAAATGCAAATGCATATCAGCTGTGTTTTGAT AAAAGCAAAAGTAAAGAGTTGTCCAGCAATCTTGCACTTGGTGAACCTGTATTCATATATTCTCCGAAGGAAAGAACCTCTGGCAAGGGTTCCGAATCAG ATGCATCTTCTTTGAGCTGGATGGGTTCAACTGTTACTGATGTAATTAATAGAGTGCACGTTTTGCTATCGCCTAGTTCTGGTTCTTGGTTTGGCACTAA GAGTCTTCGCCTCCCTGGCCATGTTCTAATATATGGACCTCATGGTTCTGGAAAGACCATGTTAGCAAAAGCTGTGGCCAATTTCGTTGAAAGACACAGA GACATATTAGCACATGTGGTTTTCGTAAGCTGCTCTGGTCTTGCTTCAGAAAAGCCCATGGCCATTCGTCAGAAACTATCAGCTTCTATCTCTGAAGCGT TAGATCATGCACCTTCAGTTGTAATCTTTGATGATCTTGATATCATTGTTTCAGCATCTCCTGATTCTGAAGTGTCTCAGCCTTCAACTTCCGTTGTTGC ACTGACAAAATACCTAGCTGATGTTATTGACGAATATGGGGAAAAGAGGAATAGCTCATGTGGCATTGGCCCAATCGCTTTCATAGCTTCACTGCAGCGA CTGGAGAATATACCTCAATCACTGAGCTCTTCAGGTAGATTTGACTTTCATGTGGAACTTCCTGCTCCTGCTGCATCTGAACGTGGGGCTATTTTGAAGC ATGAAATACAGAAGCGTTCCTTACATTGTCCAGATGACGTTTTATTGGATGTAGCATCCAAATGTGATGGTTATGATGCATACGATCTGGAAATATTGGT TGATAGAGCCGTACACGCTGCAGTTGGCCGCTTTCTTCCTTCTCTTTCTAATGGAGAGCATGAGATACCAACTTTACTTAAGGGAGACTTATTGAGGGCA ATGAATGGGTTCCTTCCAGTTGCTATGCGTGATATTACTAAAACTGCTTCTGAAGGTGGTCGTTCCGGATGGGAAGATGTTGGTGGACTGAATGATGTCA GAAATGCTATAAGAGAGATGATTGAGTTGCCATCAAAATTCCCAAATATCTTTGCTCAAGCTCCTTTAAGATTGCGTTCAAACGTTCTTCTCTACGGTCC TCCTGGTTGCGGCAAGACTCACATTGTAGGTGCTGCTGCTGCTGCTTGTTCACTGCGGTTTATATCAGTGAAGGGACCTGAGCTGTTGAACAAATATATT GGTGCTTCTGAACAAGCGGTTCGTGATATTTTCTCAAAAGCAGCTGCAGCAGCACCCTGCCTTCTCTTCTTTGATGAATTTGATTCAATAGCACCTAAAA GAGGACATGATAACACCGGCGTAACTGATCGGGTTGTCAACCAATTTCTGACTGAATTAGATGGTGTCGAAGTTTTGACTGGGGTTTTCGTATTTGCTGC GACAAGTCGACCAGACCTGCTTGATGCTGCACTGTTGAGACCTGGTAGGCTAGATAGACTTCTTTTCTGCGACTTTCCATCTCAGCAAGAAAGGTTGGAT ATCCTTAAAGTTCTCTGCAGAAAGCTACCACTGGCTCAAGACGTAAACTTACACAACGTAGCTCGCAAGACGGAGGGATTTAGCGGAGCTGACCTACAAG CTCTTCTCTCCGATGCACAGCTTGCCGCAGTTCACGAGTTTTTGAACACCATAGACACTGCCACCACAACCTCGCCGGAGAAAAAGCCAGTGATGACTGA TTCTGTGTTGAATGACATTGCTACTAAAGCAAGACCATCGATTTCGGAATCAGAGAAGCAGAGACTGTATGGAATTTATAGCCAGTTCCTGGATTCAAAG AAGTCCGCGGACGCACAGGTTTACTCTCTCGTTCTATTGTCTTGCTGTATTTATCATTTCCCTCCATATGCTAACACGGCTACTCTGAATAATAATATGC AGATGAGGGATACCAAGGGCAAAAGGGCGACGCTAGCCTGA
AA sequence Show only first row Show all	>Lus10023123 pacid=23170277 polypeptide=Lus10023123 locus=Lus10023123.g ID=Lus10023123.BGIv1.0 annot-version=v1.0 MEFEVCHVSGAESCFVSLPLQLIQTLDSLRPSLLPQPQLLVLELRSLTSTADHHSWTVSWSGATSSSSAIEIGRHFAECISLLDHSRVRVKVVSNVEHAE RVTVEPDTEDDWEVMELKAEFAEASMLSQVKIVKEGMRFPLWLHGHSVVTFCVVSTLPKKAVVQLGQDTEVEVAPKIRQKLVNKSDASVQSSDKQHNVKE ALLRIQDSDRRLFQRCNVKGVDLEVALTTVAYIHPETAKYFLFESLHLVVLIPKFSSREKVDNEGSRVKSTSEKEVSRRAIIRLVFSDSVSKGHLMIAES LRLSLRTGLHSWVYVKEYYGGLREDISLLSLSPCKIKTMGKDRSVGKFSMEGLSSHRRAKLQMMISKSTPGEDLDETDSLMHGDLMASLLSDFPHIESAE GMHRSDSTKTLSRLLHAWLGAQVEAIASASGVEVNSLTLGKETVIHFELKGVDDGTGRKSDSTAVLQDKIGEVPLTFLYLLTAPEDSPQENANAYQLCFD KSKSKELSSNLALGEPVFIYSPKERTSGKGSESDASSLSWMGSTVTDVINRVHVLLSPSSGSWFGTKSLRLPGHVLIYGPHGSGKTMLAKAVANFVERHR DILAHVVFVSCSGLASEKPMAIRQKLSASISEALDHAPSVVIFDDLDIIVSASPDSEVSQPSTSVVALTKYLADVIDEYGEKRNSSCGIGPIAFIASLQR LENIPQSLSSSGRFDFHVELPAPAASERGAILKHEIQKRSLHCPDDVLLDVASKCDGYDAYDLEILVDRAVHAAVGRFLPSLSNGEHEIPTLLKGDLLRA MNGFLPVAMRDITKTASEGGRSGWEDVGGLNDVRNAIREMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI GASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSQQERLD ILKVLCRKLPLAQDVNLHNVARKTEGFSGADLQALLSDAQLAAVHEFLNTIDTATTTSPEKKPVMTDSVLNDIATKARPSISESEKQRLYGIYSQFLDSK KSADAQVYSLVLLSCCIYHFPPYANTATLNNNMQMRDTKGKRATLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	0	1
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10012626 [exp]	2.8	0.8556
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	9.2	0.7978
AT3G61960			Protein kinase superfamily pro...		Lus10030182 [exp]	10.2	0.7629
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	13.2	0.8255
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Lus10036447 [exp]	14.7	0.7923
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10037411 [exp]	20.3	0.8076
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	21.9	0.7780
AT1G63490			transcription factor jumonji (...		Lus10008495 [exp]	22.0	0.8055
AT1G03000		PEX6	peroxin 6 (.1)		Lus10040918 [exp]	23.0	0.8094
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	23.8	0.8111

Compare expression of checked genes

Lus10023123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.