Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 265 / 6e-83 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT2G28550 252 / 2e-77 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G67180 246 / 1e-76 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 194 / 2e-55 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT3G54990 147 / 2e-40 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT5G57390 146 / 1e-37 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G72570 142 / 4e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 144 / 5e-37 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 142 / 3e-36 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 140 / 1e-35 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015055 [exp] 663 / 0 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10019905 [exp] 426 / 2e-144 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 351 / 2e-117 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 253 / 4e-78 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10018124 [exp] 253 / 1e-77 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10041595 [exp] 249 / 5e-77 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 250 / 7e-77 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 244 / 1e-73 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10036141 [exp] 227 / 1e-67 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G084500 [exp] 328 / 2e-106 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 327 / 4e-106 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.008G045300 [exp] 262 / 7e-81 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 256 / 3e-78 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 251 / 7e-77 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G216200 [exp] 247 / 2e-75 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.003G185300 [exp] 140 / 7e-37 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.003G205700 [exp] 143 / 9e-37 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 143 / 1e-36 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.014G012200 [exp] 144 / 3e-36 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10023165 pacid=23170373 polypeptide=Lus10023165 locus=Lus10023165.g ID=Lus10023165.BGIv1.0 annot-version=v1.0 ATGCTGGTAGATCTTAACCTCACCATGGTTTCCTCCGCCGTCAACCGAAATTCTTTCACCTCCGATGATAATATGAAGCGCCGTTTCGACTTCTCTCCCT CTAACAACCAACTCGACAGCTCCGGGAGCTTTAATTCCTCCTCAGTTGTTAACGTCGACCCTAACAGTAACGCTAATGCTGTTGTTCCAGGGGACGACGA CTCTTGCTCTATTCATAATAATCATGGTGCTCTGTTTGGCTACAGTTTCCATATCTTGACCGAGGACCAGCGAGCCAGCAAGAAGAAAATGGCCGTGGAC GAAGATGATGATAAGCACAATCACAATGACCGTACTATTCAGCTGTTCCCGGTTTCTCAGGGTGGAGTAGGACGCGGGGGAGGAGTGAATGCGGTCGCTC AGTGTTTCGGTGCGAGTAAGGTGTGGTTAGATCTCGGTGGCAGAGAGGTTGAGTACGGCGGCCTTGCGGAGAAGGTTGTGGCGGCAACGACTCAAGTTCA GCAGCAGCAGCAGAAGCCTCCGGCAAAGAAGAACCGACGAGGTCCGCGGTCCAAGAGCTCGCAGTATCGGGGCGTCACGTTTTACCGGAGGACTGGCCGT TGGGAATCGCACATTTGGGATTGCGGGAAGCAAGTTTATCTTGGGGGATTCGACACTGCTCATGCTGCAGCTAGAGCGTATGATCGAGCTGCGATCAAAT TCCGTGGAGTGGATGCTGATATCAACTATAATGTCAGCGATTACGATGATGATATTAAGCAGATGAGCAACTTCACAAAGGAGGAATTTGTTCACATACT CCGTCGCCAGAGCACTGGATTCTCAAGGGGAAGCTCCAAGTTCAGAGGAGTCACACTCCACAAATGTGGGAAATGGGAAGCTCGGATGGGGCAGCTTCTG GGCAAGAAGTACATATATCTTGGCCTTTATGATACCGAGATAGAAGCTGCGAGGGCCTATGACATGGCTGCCATTGATTGCAATGGTAGGGATGCGGTCA CCAATTTCGAGCCTAGCTCATATGATGGGGAGATCATGTCTGAGGTCAAGCCTGAAGATCAAAGTCTTGATCTGAACTTGGGTATTGCTCCTCCTGATGC ACATGAAGGCAGAAGGGTAAAAAGCAATGCAAGCAGCTTTTGCATCCCGGTTGGCCTGGACAAAGGCTCAAGGACGTTGAACTCTGCTTCAGGAACAATG AACGGTCATAATCAGCAATCCCATGGGCTTCCCATGGAAACTGAAGTTTGTCCAGCTAGGGGTGGTATAAATGGCTGTCACTTTCCAGTCTCAAAGGTGA TCATCCTGGTCTCTTGCTGTCATAGCATTTTTACCATAGGATCAATGTCTGAACTGAATGGTAGCAAAAATTGTGACGTGAATGAAGCAGGAAAGTGCAA TGGAGAAGAGGGTAGGAGGACTGGACCCTTTGCTAAACTGGGCATGGAAACTGCAAAGCCCATACGACAAAGAGAAGGCACAGCCATTCTTCTCCTCATC TGCAGCATCATCAGGATTCTCGTCGGTCTTCGACAATTACAACTGCACCTAGCTAGTTCAGCTGTGCAGCTACTCAACGCCACTCACCAAATTCAACCAT CCACGACCATTATAACCCATCAGCTGGAATTGACACCATCTTCTAACTAA
AA sequence Show only first row Show all	>Lus10023165 pacid=23170373 polypeptide=Lus10023165 locus=Lus10023165.g ID=Lus10023165.BGIv1.0 annot-version=v1.0 MLVDLNLTMVSSAVNRNSFTSDDNMKRRFDFSPSNNQLDSSGSFNSSSVVNVDPNSNANAVVPGDDDSCSIHNNHGALFGYSFHILTEDQRASKKKMAVD EDDDKHNHNDRTIQLFPVSQGGVGRGGGVNAVAQCFGASKVWLDLGGREVEYGGLAEKVVAATTQVQQQQQKPPAKKNRRGPRSKSSQYRGVTFYRRTGR WESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINYNVSDYDDDIKQMSNFTKEEFVHILRRQSTGFSRGSSKFRGVTLHKCGKWEARMGQLL GKKYIYLGLYDTEIEAARAYDMAAIDCNGRDAVTNFEPSSYDGEIMSEVKPEDQSLDLNLGIAPPDAHEGRRVKSNASSFCIPVGLDKGSRTLNSASGTM NGHNQQSHGLPMETEVCPARGGINGCHFPVSKVIILVSCCHSIFTIGSMSELNGSKNCDVNEAGKCNGEEGRRTGPFAKLGMETAKPIRQREGTAILLLI CSIIRILVGLRQLQLHLASSAVQLLNATHQIQPSTTIITHQLELTPSSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	1.0	0.9135
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	1.4	0.8981
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	8.1	0.8930
AT5G01460			LMBR1-like membrane protein (....		Lus10002488 [exp]	12.2	0.8489
					Lus10024691 [exp]	13.9	0.8224
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	14.1	0.8824
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10025860 [exp]	21.0	0.8706
AT1G52630			O-fucosyltransferase family pr...		Lus10036089 [exp]	21.2	0.7677
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	23.2	0.8210
AT1G10180			unknown protein		Lus10022896 [exp]	23.2	0.8154

Compare expression of checked genes

Lus10023165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.