Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21120 809 / 0 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 603 / 0 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 532 / 0 CAT8 cationic amino acid transporter 8 (.1) AT3G10600 409 / 3e-136 CAT7 cationic amino acid transporter 7 (.1) AT5G04770 400 / 5e-133 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT5G36940 213 / 4e-61 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 196 / 6e-55 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 186 / 7e-51 CAT2 cationic amino acid transporter 2 (.1) AT1G05940 177 / 3e-48 CAT9 cationic amino acid transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001581 [exp] 876 / 0 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042817 [exp] 621 / 0 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 557 / 0 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10040142 [exp] 374 / 2e-122 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 374 / 3e-122 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10003697 [exp] 328 / 5e-106 AT4G21120 416 / 2e-140 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10028195 [exp] 230 / 8e-68 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10042898 [exp] 225 / 8e-66 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10005671 [exp] 197 / 7e-55 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131300 [exp] 832 / 0 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.015G133100 [exp] 820 / 0 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 805 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 805 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 601 / 0 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 555 / 0 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.008G017100 [exp] 402 / 1e-133 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.003G083700 [exp] 397 / 1e-131 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.001G150700 [exp] 397 / 1e-131 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.010G241000 [exp] 393 / 5e-130 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10023271 pacid=23181025 polypeptide=Lus10023271 locus=Lus10023271.g ID=Lus10023271.BGIv1.0 annot-version=v1.0 ATGGGAATCGGCGCCGGAAAAGCCGACGACGACGTCGGAGTGAGGAAGAGAGGATGCTCATGCACAAAAGACGACTTCCTCCCGGAGGAATCGTTCCAAA GCTGGTCAAACTACGGGAGGGCCCTAAGGGAGACTCCGAAGCGGTTCATGAATCGGGTCGTGGCCCGGTCGCTGGACTCGACGGAGCTCCACGAAGTGAA GGCCGCCAGCGAGCACGAGATGAAGAAGAGCCTCAACTGGTGGGATCTGATGTGGTTCGGGATCGGAGCTGTGATCGGAGCTGGTATATTTGTACTCACT GGATTGGAAGCGCGTGATCACGCTGGCCCTGCCGTTGTGCTTTCGTATGTCGTTTCCGGCGTCTCCGCCATGCTTTCTGTCTTCTGTTATACAGAGTTCG CCGTCGAGATTCCCGTGGCCGGAGGGTCTTTCGCATACATGAGAGTGGAGCTAGGAGACTTCCTAGCCTTCATAGCAGCAGGAAACATCCTCTTCGAATA CGCAGTTAGCGGCGCCGCCGTAGCCAGAGCATGGACATCCTACTTCGCCACCCTCCTCAACCACTCCCCGGACGACTTCCGCATCATCGCCCACTCCCTC CCGGCCAATTACAACCACCTCGACCCCTTAGCCGTCGGCATCACAGCAATCATCTGCTTCCTGGCCGTCTTAAGCACGAAAGGCTCGTCCCGATTCAACT ACATTGCGTCGATCGTCCACGTCGTAATCATCCTCTTCATCATCGTTGCGGGGTTCACCAAATCCGACGTCAAGAACTTCACCCCTTTTGCTCCGTACGG CGCGCGTGGGATCTTCGTCTCGGCAGCTGTACTCTTCTTCGCTTACGTGGGGTTCGATGCTGTTTCGACCATGGCGGAGGAGACGAAGAACCCAGCTCGA GATATCCCGATTGGATTGGTCGGGTCGATGGCGGTCACCACTCTGGCTTATTGCTTGTTAGCTATAGTGCTTTGTATGATGGTTCCGTACGGTCAGATCG ATCCCGATGCTCCATTTTCGGTAGCGTTCGAGGCCGTGGGGTGGAAATGGGCTAAGTATATTGTTGCGGCGGGCGCTCTTAAAGGGATGACTACGGTTCT TTTGGTCTCGGCGGTGGGTCAGGCGCGTTACCTAACCCACATTGCCAGGACCCACATGATGCCACCGTGGCTGGCTCAAGTCAACGCGAGGACCGGCACT CCAATCAATGCCACGGTGGTGATGGCGACTGCTACGGCCATCATCGCGTTGTTCACCAAGCTCGACATTCTCTCGAATCTGCTATCGATCTCGACACTGA TTATCTTCATGATGGTGGCGTTGGCCATCTTGGTTCGCCGCTACTATGCCACCGGAGTGACCACCAGGGCCAATCAGCTGAAGCTGATCGGATGCATCTT TGGGATTCTAGGATCGGCAATTGCTACGGCGGTCTTGTGGGGGCTTGAAAGCGGGTGGATGGGGTATGTTGTGACGGTGGGGATTTGGGTTGCCGCTACG GCAGTGCTTGCCTTTGCAGTGCCGCAAGCTAAGCAGCCAAAGCTGTGGGGTGTTCCCTTGGTGCCGTGGCTTCCCTCGGCGTCGATTATGATCAATATAT TCTTGCTGGGATCGATCGATAAGGCGTCGTTTGGGAGGTTTGGGATATGGACTGCTCTGCTTTTGGTTTATTACTTGTTGTTTGGGATGCACGCTACCTA TGATCTTGCTAAGGAGTTGGAGGCTAAGAGGAAGGTGGAGGATGGTGCTAGCAAAGTTGAAGAAGGAATTAGTGGGTGA
AA sequence Show only first row Show all	>Lus10023271 pacid=23181025 polypeptide=Lus10023271 locus=Lus10023271.g ID=Lus10023271.BGIv1.0 annot-version=v1.0 MGIGAGKADDDVGVRKRGCSCTKDDFLPEESFQSWSNYGRALRETPKRFMNRVVARSLDSTELHEVKAASEHEMKKSLNWWDLMWFGIGAVIGAGIFVLT GLEARDHAGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYMRVELGDFLAFIAAGNILFEYAVSGAAVARAWTSYFATLLNHSPDDFRIIAHSL PANYNHLDPLAVGITAIICFLAVLSTKGSSRFNYIASIVHVVIILFIIVAGFTKSDVKNFTPFAPYGARGIFVSAAVLFFAYVGFDAVSTMAEETKNPAR DIPIGLVGSMAVTTLAYCLLAIVLCMMVPYGQIDPDAPFSVAFEAVGWKWAKYIVAAGALKGMTTVLLVSAVGQARYLTHIARTHMMPPWLAQVNARTGT PINATVVMATATAIIALFTKLDILSNLLSISTLIIFMMVALAILVRRYYATGVTTRANQLKLIGCIFGILGSAIATAVLWGLESGWMGYVVTVGIWVAAT AVLAFAVPQAKQPKLWGVPLVPWLPSASIMINIFLLGSIDKASFGRFGIWTALLLVYYLLFGMHATYDLAKELEAKRKVEDGASKVEEGISG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10023271 [exp]	0	1
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10036194 [exp]	1.0	0.9744
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004537 [exp]	1.4	0.9653
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008712 [exp]	5.4	0.9432
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10029533 [exp]	6.7	0.9548
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10019457 [exp]	8.5	0.9493
AT1G13550			Protein of unknown function (D...		Lus10031914 [exp]	11.6	0.9291
AT5G39150			RmlC-like cupins superfamily p...		Lus10033767 [exp]	12.7	0.9465
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10010992 [exp]	13.3	0.9364
AT5G42500			Disease resistance-responsive ...		Lus10032939 [exp]	13.3	0.9218
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	13.9	0.9582

Compare expression of checked genes

Lus10023271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.