Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 404 / 2e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 395 / 4e-116 transmembrane receptors;ATP binding (.1.2) AT1G69550 369 / 9e-107 disease resistance protein (TIR-NBS-LRR class) (.1) AT1G27180 355 / 2e-101 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G17680 338 / 9e-97 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 324 / 9e-92 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 322 / 1e-91 TAO1 target of AVRB operation1 (.1) AT5G46270 309 / 2e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 306 / 9e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 303 / 4e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038482 [exp] 1061 / 0 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10035674 [exp] 1043 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 1004 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026011 [exp] 989 / 0 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2) Lus10042714 [exp] 987 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038533 [exp] 986 / 0 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10001375 [exp] 982 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 955 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 953 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 442 / 8e-135 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 441 / 9e-135 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 438 / 3e-133 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 434 / 3e-132 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 430 / 3e-132 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 437 / 4e-131 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.012G135700 [exp] 421 / 9e-128 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 417 / 2e-127 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 421 / 5e-127 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 417 / 4e-126 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10023272 pacid=23180921 polypeptide=Lus10023272 locus=Lus10023272.g ID=Lus10023272.BGIv1.0 annot-version=v1.0 ATGGACCAGCAGCAAAAATGGAGTTTACTTGGGGCACTGGCTGTACTTTTCCTGGCAGTGATTGTAGTTTTCCTTCCTAAGAAGATCGTCCAAATCTCAC CCGGTAATTCTTCTTCACTCCCAGAATCAGTTGCAGAAAAGGAACTATTGTCTGTCCCTGATTCCTCCTCCAGCTCAGCACCTCCCATGGAGTATGAGGT CTTTCTGAGCTTCAGAGGCCCCGACGTGCGTACAAACTTTGCCGATTTCCTCTACAGGGATTTGGACCGTTCCAAGATTCGGACTTTTCTAGATGATGTA GAGCTTCGAAAGGGAGAAGAAATCGCCGCTTCCCTTGTCAAGGCTATTGAAGAATCGAAGGTTTATATACCAATCCTTTCCCAGAATTATGCTTCTAGTA AGTGGTGCCTTATGGAGCTAGCTCTAATGGTGAAGTGCCGCCGCAAGCAAGGAAACGGCCACCACATCATACTGCCTATTTTCTACATGGTGGAGCCTAG AGATGTACGGCATCAAGAAGGTTCTTACAAGAAGGCGTTTCGACAGCACGCTAAGAGATATAAGATGGAAACTGTGAATGAATGGAAGGATGCTCTTGGG GAAGTCGGCAAAATGAAGGGATGGCACGTCACCGAGTCTGATGGACAGGGGGCTATCATTGGCAAAGTTTTCACTGAGGTGTGGTCACATCTTATGTCGA ATTATAAACTTGTGACAGATGAGTTGATTGGAATTGAATCTCATGTAGAAAACGTGACGAGACTACTAAGTTCAGACGCCAAAGGAGTGAGAATCGTTGG GATTCACGGTATGGGAGGTATCGGTAAGACAACTATAGCCAAGGCTGTATACAATGGTATTTTTGGACAATTTGATCGCTCTTGCTTCTTGGAAGATGCA CAAGAAACATTGTCGAAAAGCAATGGTGTTGTGACTTTGCAAAGTATGCTTATCTCCGCTATTCTGAGAACTGATTACAAGGTTAAAGATGCTAGTGAAG GGCTCCGCATAATAAAAGATAGAGTTTGCCAGCACAAGGTTCTTGTTGTTCTTGATAATGTGAATGATTCATTTGAGTTTGACAGAATCTTGGGGAAATG GGATGACTTCTCGTTGGACAGTAGATTTATCGTTACAACAAGAGACAAAAGGATTCTACAAGTTCTTCAAGGATGCAAGTTCTACGAACCTGGAGAAATC AATCATGAGGACGCCCTTAAACTCTTCTGCAAACATGCATTTGGAACAGATGAACCCCCAGAAGGCGAAGGGATTCTAGCCGAGGAGTTTGTAAAAGCTG CAGCAGGCTTACCTCTGTCTCTTAAAGTTATAGGGTCACTCATATTTCGTACAGAGAGAAAATTCCGTGAAGCGAAGTTAATAGAATTGAAGGACATACC TCCTGAAAAGTTGCAAGAGAGGTTAAAAGTAAGTTATAACGAGTTAAGTCACAGTGAAAGACAGATCTTTCTTGACATTGCTTCTTCTTTTATTGGTGAG AAGAGAGACCTCCCTTCCTACATGTGGAACGACTGCAAGCTGTATCCTGAAAGTGGAATTAGCACTCTCATGCTTCGATCCTTGGTAAGACTTAATGAGA GAAATGAGTTTTTGATGCATGATCACATCAGAGATCTTGGTAGAGAAATTATACGCGAAGAGAATTATCAACATCCTTGGAAGCGCAGCAGAATATGGTC TAACGAAGATGCCATGGACATGTTAAAAGATGAAGAGGGGAGCGACCAAGTTCAAGTTCTCAGAGTTAATATGGAAGAAGAAAATCTAGAGCTGACAGAT GAACGATTTAAGAAACTGTCAGGATTAAGGTATCTTGAAGTGTTTTCCGGAAGACTGACTGGAGATTTCAAAGGAGTTCTCCCAAATCTACGTTGGCTTA GACTGCATAAGTGTAGTTCAATTCCCACTGATCTTAATATGAAGAAACTGGTTATTCTTGATATGCATGAGTGCCCGGTAAAAGATGATTGGAATGCCTG GACAGGAATTCAGGTAGCACAGAAGCTGAAAGCTGTAAGTCTATCTTTTTGCGGAGCCTTGAGAATAGCTCCCGACCTGTCGCAATGTAGAAGTCTGGAG TCGATACATTTTTGGAACTGCTGGGAAATGGGAGGGGAATTGCACATTGGAAATTTCAGGAGTCTAAAAGTGCTGAGCCTGACCATGACTAAAATAACAA CATTAACCGGTAAGATTCGAATGCTTAAAAATCTTGAAGAGATCGATGCAGGGCATCTGATAGAATTACCTGCTGGAATCGACAGATTATCCTCTCTGAA AATCTTGATCCTGACATCATCACTTGAGTCACAGTTGAAGCAACTAGCAATACTCCCCACAAGTTTAAAGAAGCTGTCCCTCCCATCCTCACAAGTTCCG AACCTTTCAGAGCTTACGGACTTAGAGGAGCTGTCCTTTGAGAGATGTGATCAGCTACAACTTCCTGTGGATATGTGGAAGCTATCCAAGTTGAAAGCTC TGAAGATTTGGGACTCGTCTTGTTCTAACAGTCTACTGGTTGAGGAGGCTGAGAATAGTACGGTTGCTACCCTCCCATCTTCTCTAAAAAACCTTTTGAT TTGTGGCTGCGAGGATCTGGAGAGACTACCGAGCTTTACAAATCTAGTTAACTTGGCGGAACTAAAGTTGATTCGGATTAAGGTACATGAGATTCAGGGT TTGGGAGACCTGAGAATGCTAGAAACATTGGTAATATCTGCTGCCCCGAATCTAATTACTCTCAACGGCCTTGAAAATCTGTTTCTTCTCAGGACACTCA CAGTAGAAAGCTCTTCTGCACTGGTGAAACTACCCAGTATATCAAAGTTGGCCAATTTACACACAGTAGAGATCACTTCCTGTCAACTTCTCTCTGAAAT TCAAGGCCTGGGCGATCCCGGGGAGTTCTCTTTGTTGAGTCTGTCTATTATTGATTGTCCTGGATTAGCAAATGCTGATGGCCTCCGCTCTCTATGGAAG CTAGTCACACTGAAAACGCTACGTCTGTATCTTTCCGAGACTGGTGATGACCATCTCTCGACACGAGAAAAGTTCCTCGATCTCTCTGGTCTACAGAATA TGGAGCAGTTGTTAATTTTCGGCTGCGGAAGGTTGACCAAGGTCTACGGGCTTGAGAAGCTGAAACTATTGAAGTCGTTAACTTTGTCAGGCTGCACTTT GATGAAAGAGTTGCCTGATTTATCCGGTCTCGAGAATCTCAAGTATCTAAATATCGACGGATGGACACAGTTGGTTGACATTAAAGGACTCGAAGCGTTG GAGGCTTTGGAAATGCTAGATATGTCGGGCTGCATTTCAGTTAGCAAGTTCCCTGACCTGTCAGGTTTGAAGCATCTGGAGAAATTAGTAGTTGACGACT GCACACAGTTGACAGATGTGGCGAGCCTCGAGAGATCAGTGTCGCTGCGATCGATCAGCATGATGAACTGCGTATCGGTTACAAAGTTTCCGAATTTATC CGGTCTCACGAATATCGATTCGTTACAGATTAGTGGATGCACAGGGTTGACTGAGGTTACCGGGATTGAGAGTTTGGAGTCGCTGGAAATGTTGAATATG TCGGGATGTTCCTCACTAACGGAGTTGCCAGATTTGTGCGAGTTAGCCAAGATTACTACTTTAGATATAAGTGAATGCAAGCAGTTGGTTGATGTTATGG GGATCGAGAACTTGGAGTCGTTGCACGAGCTGAAGATGACGAATTGCGTATCGATTCAGAAGTTGCCTGATCTATCTGGTTTTACGAATTTGCGCGAGCT GGATATTTCCAGATGCGTGCAATTGGGTGACGTTAGAGGAATCGAAAAGCTGGAGTGGTTAAATATCAGTCGTTGA
AA sequence Show only first row Show all	>Lus10023272 pacid=23180921 polypeptide=Lus10023272 locus=Lus10023272.g ID=Lus10023272.BGIv1.0 annot-version=v1.0 MDQQQKWSLLGALAVLFLAVIVVFLPKKIVQISPGNSSSLPESVAEKELLSVPDSSSSSAPPMEYEVFLSFRGPDVRTNFADFLYRDLDRSKIRTFLDDV ELRKGEEIAASLVKAIEESKVYIPILSQNYASSKWCLMELALMVKCRRKQGNGHHIILPIFYMVEPRDVRHQEGSYKKAFRQHAKRYKMETVNEWKDALG EVGKMKGWHVTESDGQGAIIGKVFTEVWSHLMSNYKLVTDELIGIESHVENVTRLLSSDAKGVRIVGIHGMGGIGKTTIAKAVYNGIFGQFDRSCFLEDA QETLSKSNGVVTLQSMLISAILRTDYKVKDASEGLRIIKDRVCQHKVLVVLDNVNDSFEFDRILGKWDDFSLDSRFIVTTRDKRILQVLQGCKFYEPGEI NHEDALKLFCKHAFGTDEPPEGEGILAEEFVKAAAGLPLSLKVIGSLIFRTERKFREAKLIELKDIPPEKLQERLKVSYNELSHSERQIFLDIASSFIGE KRDLPSYMWNDCKLYPESGISTLMLRSLVRLNERNEFLMHDHIRDLGREIIREENYQHPWKRSRIWSNEDAMDMLKDEEGSDQVQVLRVNMEEENLELTD ERFKKLSGLRYLEVFSGRLTGDFKGVLPNLRWLRLHKCSSIPTDLNMKKLVILDMHECPVKDDWNAWTGIQVAQKLKAVSLSFCGALRIAPDLSQCRSLE SIHFWNCWEMGGELHIGNFRSLKVLSLTMTKITTLTGKIRMLKNLEEIDAGHLIELPAGIDRLSSLKILILTSSLESQLKQLAILPTSLKKLSLPSSQVP NLSELTDLEELSFERCDQLQLPVDMWKLSKLKALKIWDSSCSNSLLVEEAENSTVATLPSSLKNLLICGCEDLERLPSFTNLVNLAELKLIRIKVHEIQG LGDLRMLETLVISAAPNLITLNGLENLFLLRTLTVESSSALVKLPSISKLANLHTVEITSCQLLSEIQGLGDPGEFSLLSLSIIDCPGLANADGLRSLWK LVTLKTLRLYLSETGDDHLSTREKFLDLSGLQNMEQLLIFGCGRLTKVYGLEKLKLLKSLTLSGCTLMKELPDLSGLENLKYLNIDGWTQLVDIKGLEAL EALEMLDMSGCISVSKFPDLSGLKHLEKLVVDDCTQLTDVASLERSVSLRSISMMNCVSVTKFPNLSGLTNIDSLQISGCTGLTEVTGIESLESLEMLNM SGCSSLTELPDLCELAKITTLDISECKQLVDVMGIENLESLHELKMTNCVSIQKLPDLSGFTNLRELDISRCVQLGDVRGIEKLEWLNISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10023272 [exp]	0	1
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	6.7	0.8886
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10012798 [exp]	9.2	0.8978
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10016661 [exp]	10.2	0.8752
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014897 [exp]	15.1	0.8890
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	17.3	0.8882
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	22.4	0.8707
AT1G50030		TOR	target of rapamycin (.1.2)		Lus10037246 [exp]	25.1	0.8679
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	27.8	0.8834
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	28.1	0.8753
AT5G58410			HEAT/U-box domain-containing p...		Lus10026420 [exp]	28.3	0.8657

Compare expression of checked genes

Lus10023272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.