Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34560 543 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G80350 288 / 3e-90 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 248 / 1e-75 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT2G45500 239 / 5e-72 AAA-type ATPase family protein (.1.2) AT3G27120 234 / 5e-70 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G30070 196 / 9e-59 SGS domain-containing protein (.1.2) AT1G02890 207 / 1e-56 AAA-type ATPase family protein (.1.2) AT4G02480 204 / 1e-55 AAA-type ATPase family protein (.1) AT3G19740 203 / 1e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 201 / 3e-55 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038499 [exp] 733 / 0 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10011477 [exp] 295 / 1e-92 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 294 / 2e-92 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038500 [exp] 268 / 2e-86 AT1G30070 290 / 1e-100 SGS domain-containing protein (.1.2) Lus10004891 [exp] 251 / 5e-77 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 251 / 7e-77 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10038001 [exp] 251 / 1e-76 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10019537 [exp] 250 / 1e-76 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10009233 [exp] 251 / 2e-76 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065100 [exp] 614 / 0 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G085200 [exp] 613 / 0 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G176900 [exp] 290 / 1e-90 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G057800 [exp] 283 / 2e-88 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G184500 [exp] 253 / 1e-77 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 251 / 3e-77 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 251 / 4e-77 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 247 / 2e-75 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 244 / 2e-74 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.014G071900 [exp] 246 / 4e-74 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] PF09032 [flax] [poplar] Siah-Interact_N Siah interacting protein, N terminal
Representative CDS sequence Show only first row Show all	>Lus10023310 pacid=23180936 polypeptide=Lus10023310 locus=Lus10023310.g ID=Lus10023310.BGIv1.0 annot-version=v1.0 ATGGCGAGTGATTTAGATCTAGACTTGGAGGAGCTCAAACAGCTTCAAGGTTTAGCCAAGAGGCCACGAGTCCTATCCCTCATCTCTTCCGAAATTCGCA GCTTGGAGCAGATGTCTAGAGATTATGCTCCAACTCCAACTCCAGCTCCCGTCGCTACTGAGGCTAAGCCATCTGCTCTCCCTACGCTATACTCGGCGCT CGGATCATTCAGCTATGATCAGGACAGTGAGAAACTCAAGATATATGTATCTTTGGAGGGGGTTGATGAAGAGAAAATTGAGGCAGAATTCAATCCAAGG TCCTTCGACATCAAATTCCACGATGTCCAAGGAAAGAACTACAGATGTGCCATACCAAAGCTGAACAAGGAGATAGTGCCCGAGAAGTGTAAGGTGTTGG TTAAGCCTAAGAGGGTCGTCATCACTCTGTTCAAAGCTTCAAAGGGTAATTGGTTGGACTTGCACTTCAAAGAAGACAAGCTGAATCCGGATCTGGGGAA GAACAGTGATCCGATGGCTGGGATTATGGGATTGATGAAGGATTTCAAAACCCACTACGATGATAAGTTCGGAAGAAAGAAAGCGCAGGAGTCCCGAAAC GGTCAAGTGAACGGTAATGGATCGGTCTCCAACGGGAGTTCTTCAGGCATTGTTGTTACTAATGGCAACGGCCAGGTGAAGAATCCATCTGACATGGCCA TTTATGAGCAGTTCAGAAACCAGCAGAATGGGAGCTCGGGTCACCAGAGTGAAACTTCATCCAATGGAGTTGCTGAAGTTCCGCAGAAGTCCTTGCTCCC TGCTTTTGATTCTGCTGAAACACGCACTTTAGCTGAGGGTTTATGCAGGGACATTATACGTGGGAGCCCGGATGTTAATTGGGAAAATATCAAAGGGCTA GAGAATGCCAAGCGCTTACTTAAAGAAGCGGTAGTCATGCCGATAAAGTATCCGAAGTATTTTACAGGTCTTTTATCACCATGGAAAGGCATTCTTCTTT TTGGACCTCCTGGTACAGGAAAGACAATGCTTGCAAAGGCCGTTGCTACAGAGTGCAAAACCACATTTTTCAACATCTCTGCATCTTCTGTTGTTAGCAA GTGGCGAGGGGACTCGGAGAAGCTAATAAAGGTCTTATTTGAGCTTGCTAGACACCACGCACCATCAACTATATTTATTGATGAAATAGATGCAATTATC AGTCAGCGTGGTGGTGAAGGTAAGGGTGAGCATGAAGCAAGCAGGCGCTTGAAGACTGAGCTTCTCATTCAGATTTCTTCAAAATATAGAGCGCTACTTT CTCAAACTATCCCAATTAGATTGCAGATGGATGGGTTGATGCGAACAAAGGATCTTGTATTTGTCCTGGCAGCCACCAATCTTCCCTGGGAGTTAGATGG AGCTATGCTGCGGCGTCTTGAGAAGCGAATCCTAGTACCACTTCCGGAGCCAGAAGCAAGAAGAGCAATGTTTGAAGAACTACTACCAACATCAGGAAAG GGCGAAGACGAAGAGGCCGCCAACCTTCCCTTTGACGTTTTGGTGGAGAGGACAGAGGGTTATTCGGGTTCTGATATTCGCTTGCTCTGCAAGGAAGCCG CTATGCAGCCATTACGACGAGTTATGGCCATCCTTGAAGACAAGGAGGAAATCGTGCCTGAGGATGAGTTGCCGCAAGTTGGGCCAATAACAGCTGAAGA CATAGACGCAGCTTTGAAGAACACGAGGCCGTCTGCCCATCTTCACGCCCACCGGTACGAGAAGTTCAACGACGATTATGGAAGTCAGATTCTCCAGTGA
AA sequence Show only first row Show all	>Lus10023310 pacid=23180936 polypeptide=Lus10023310 locus=Lus10023310.g ID=Lus10023310.BGIv1.0 annot-version=v1.0 MASDLDLDLEELKQLQGLAKRPRVLSLISSEIRSLEQMSRDYAPTPTPAPVATEAKPSALPTLYSALGSFSYDQDSEKLKIYVSLEGVDEEKIEAEFNPR SFDIKFHDVQGKNYRCAIPKLNKEIVPEKCKVLVKPKRVVITLFKASKGNWLDLHFKEDKLNPDLGKNSDPMAGIMGLMKDFKTHYDDKFGRKKAQESRN GQVNGNGSVSNGSSSGIVVTNGNGQVKNPSDMAIYEQFRNQQNGSSGHQSETSSNGVAEVPQKSLLPAFDSAETRTLAEGLCRDIIRGSPDVNWENIKGL ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFIDEIDAII SQRGGEGKGEHEASRRLKTELLIQISSKYRALLSQTIPIRLQMDGLMRTKDLVFVLAATNLPWELDGAMLRRLEKRILVPLPEPEARRAMFEELLPTSGK GEDEEAANLPFDVLVERTEGYSGSDIRLLCKEAAMQPLRRVMAILEDKEEIVPEDELPQVGPITAEDIDAALKNTRPSAHLHAHRYEKFNDDYGSQILQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34560			P-loop containing nucleoside t...		Lus10023310 [exp]	0	1
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	3.2	0.9369
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10030939 [exp]	3.2	0.9072
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	4.9	0.9359
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030617 [exp]	6.2	0.9005
AT5G59410			Rab5-interacting family protei...		Lus10016530 [exp]	10.4	0.9191
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Lus10015153 [exp]	13.0	0.9093
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	13.1	0.9308
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	13.4	0.8937
					Lus10023559 [exp]	15.9	0.9190
AT1G45688			unknown protein		Lus10029743 [exp]	16.1	0.9302

Compare expression of checked genes

Lus10023310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.