Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46450 113 / 3e-27 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G31540 110 / 3e-26 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G58120 108 / 2e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G66090 106 / 2e-25 Disease resistance protein (TIR-NBS class) (.1) AT1G65850 107 / 6e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46470 107 / 6e-25 RPS6 RESISTANT TO P. SYRINGAE 6, disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 107 / 6e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G63870 106 / 7e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 105 / 2e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 105 / 2e-24 disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023487 [exp] 353 / 2e-111 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10034697 [exp] 306 / 5e-96 AT5G36930 300 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 301 / 1e-92 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10038532 [exp] 284 / 7e-89 AT5G36930 307 / 3e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000331 [exp] 243 / 9e-72 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038533 [exp] 239 / 1e-70 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10008027 [exp] 211 / 9e-66 AT5G36930 197 / 5e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018309 [exp] 209 / 9e-64 AT1G27180 245 / 1e-71 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10023272 [exp] 220 / 1e-63 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002200 [exp] 133 / 7e-34 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 130 / 2e-33 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 131 / 3e-33 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 131 / 3e-33 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 131 / 3e-33 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 131 / 4e-33 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002568 [exp] 129 / 5e-33 AT5G36930 439 / 2e-142 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 129 / 1e-32 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 129 / 1e-32 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G097300 [exp] 127 / 1e-32 AT4G16860 272 / 8e-81 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10023329 pacid=23180947 polypeptide=Lus10023329 locus=Lus10023329.g ID=Lus10023329.BGIv1.0 annot-version=v1.0 ATGCGAAAGACCGAGACCTCCAACCTCATCAAGGCGATTGAGGAATCAAAGATCTATATCCCAATCTTCTCCCCGGACTATGCTGCTAGTAAATGGTGCC TTCTGGAACTGGCTCATGTGGTGAAGTGCTTTGAGCAAGGAAAGGGCCACCTCATCCTGCCCATATTCTATTTTGTGGAGCCAAGAGAGGTGCGGGGTCT AAAGGGTTCTTTTGGGGAAGCATTTAGACGACTTGCCAGGGAATATGATGCAGAAACAGTAACAGAATGGAAGCAAGCTCTAAAAAAGGTTGGAAAACTG AAGGGATGGCCTGTGACTGAATCAGATGGACAGGGAGCTGTTATTGCTGAAGTTTTTTCTAAGGTGAGGTCACTTCTGATGGGGAATTACAAGTTAGTGA CCGAAGAGTTGGTTGGAATTGATCCCCATGTAGAACAAGTGATAAAACTACTGAAGAAAGAAGTGAAAATCGTTGGCATTCAAGGTATGAGCGGTATTGG TAAGACCAGTATAGCCAAATCCGTCTGTGACAAGGTTCATTCACAGTTTAAATGCTGCTTTGTGAAAGATGTGCGAGAAATATTGTCAGGGAATGATGCT AGTCAAGGAATCTGCACAATAAAAGATAGAGTTGCCTGGAGGGACAGAATTCTCATTGCTCTGGATGATGCTCTATCTGATGACTTTGTAGAAGCTGCAG CAGGTCTTCCTTTGACTCTTAAGGCCATAGGTTCACACCTTTCCCGCAAAGGTAAAAGTTTTTGGGATGAAAAGTTGATACAGTTTCGGCAAATACCTCC TGTCATGGTGCAAGAGAGATTGCTGATAATCTATGAGGAGTTGACTCCTCATGAAAACCATATCTTTCTTGATATTGCTTGTTGTTTTATTGGAGAACAC TGTGATCTACCTTCGGTCATGTGGAGTGATTTGGATTTATATCCAGGAATTGTGATTGATACTCTTCGTCTCAAGTCATTGATTAAAATCAATGATAGAA TGCAATTCTGGATGCATCATCAGTATAAAAACCTTGGTAGAGCTATTGTTCGTGATAAAGACACTCAAAATCCGTGGAAACGCAGCAGAATGTGGTCCAA CAAAGATGTGCTCGACATGTTATGA
AA sequence Show only first row Show all	>Lus10023329 pacid=23180947 polypeptide=Lus10023329 locus=Lus10023329.g ID=Lus10023329.BGIv1.0 annot-version=v1.0 MRKTETSNLIKAIEESKIYIPIFSPDYAASKWCLLELAHVVKCFEQGKGHLILPIFYFVEPREVRGLKGSFGEAFRRLAREYDAETVTEWKQALKKVGKL KGWPVTESDGQGAVIAEVFSKVRSLLMGNYKLVTEELVGIDPHVEQVIKLLKKEVKIVGIQGMSGIGKTSIAKSVCDKVHSQFKCCFVKDVREILSGNDA SQGICTIKDRVAWRDRILIALDDALSDDFVEAAAGLPLTLKAIGSHLSRKGKSFWDEKLIQFRQIPPVMVQERLLIIYEELTPHENHIFLDIACCFIGEH CDLPSVMWSDLDLYPGIVIDTLRLKSLIKINDRMQFWMHHQYKNLGRAIVRDKDTQNPWKRSRMWSNKDVLDML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10023329 [exp]	0	1
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	1.0	0.9385
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	4.6	0.7852
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	4.9	0.8039
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	11.8	0.7832
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	12.0	0.7429
					Lus10007688 [exp]	13.1	0.7063
AT3G13810	C2H2ZnF	ATIDD11	indeterminate(ID)-domain 11 (....		Lus10004840 [exp]	16.0	0.7169
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	16.5	0.7380
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	17.7	0.7318
					Lus10027443 [exp]	24.2	0.7212

Compare expression of checked genes

Lus10023329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.