Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20440 209 / 2e-67 SMB small nuclear ribonucleoprotein associated protein B (.1.2.3.4) AT5G44500 205 / 5e-66 Small nuclear ribonucleoprotein family protein (.1.2) AT1G76860 45 / 3e-06 Small nuclear ribonucleoprotein family protein (.1) AT1G21190 45 / 3e-06 Small nuclear ribonucleoprotein family protein (.1) AT3G62840 39 / 0.0003 Small nuclear ribonucleoprotein family protein (.1.2) AT2G47640 39 / 0.0003 Small nuclear ribonucleoprotein family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038421 [exp] 282 / 3e-96 AT5G44500 263 / 2e-88 Small nuclear ribonucleoprotein family protein (.1.2) Lus10013108 [exp] 235 / 8e-78 AT5G44500 269 / 5e-91 Small nuclear ribonucleoprotein family protein (.1.2) Lus10003498 [exp] 80 / 5e-18 AT5G44500 81 / 1e-18 Small nuclear ribonucleoprotein family protein (.1.2) Lus10026326 [exp] 42 / 6e-05 AT1G76860 176 / 4e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10011293 [exp] 41 / 6e-05 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10040487 [exp] 41 / 6e-05 AT1G76860 175 / 8e-59 Small nuclear ribonucleoprotein family protein (.1) Lus10030367 [exp] 41 / 8e-05 AT2G47640 185 / 2e-62 Small nuclear ribonucleoprotein family protein (.1.2.3.4) Lus10007876 [exp] 41 / 8e-05 AT2G47640 185 / 2e-62 Small nuclear ribonucleoprotein family protein (.1.2.3.4) Lus10026556 [exp] 41 / 8e-05 AT2G47640 184 / 3e-62 Small nuclear ribonucleoprotein family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440100 [exp] 216 / 1e-69 AT4G20440 211 / 2e-67 small nuclear ribonucleoprotein associated protein B (.1.2.3.4) Potri.011G155700 [exp] 215 / 1e-69 AT4G20440 218 / 2e-70 small nuclear ribonucleoprotein associated protein B (.1.2.3.4) Potri.005G191600 [exp] 45 / 2e-06 AT1G76860 176 / 3e-59 Small nuclear ribonucleoprotein family protein (.1) Potri.002G068800 [exp] 45 / 2e-06 AT1G76860 175 / 1e-58 Small nuclear ribonucleoprotein family protein (.1) Potri.002G204300 [exp] 41 / 8e-05 AT3G62840 204 / 6e-70 Small nuclear ribonucleoprotein family protein (.1.2) Potri.014G129100 [exp] 41 / 8e-05 AT3G62840 204 / 6e-70 Small nuclear ribonucleoprotein family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10023386 pacid=23181097 polypeptide=Lus10023386 locus=Lus10023386.g ID=Lus10023386.BGIv1.0 annot-version=v1.0 ATGTCGATGTCGAAGAGCTCAAAGATGCTCCAGTACATCAACTACCGGATGCGAGTCACCATTCAGGACGGGCGGCAGCTGGTAGGCAAATTCATGGCCT TCGACCGTCACATGAATCTCGCCCTCGGCGACTGCGAGGAGTTTCGCAAGCTCCCTCCGGGTAAGGGGAAGAAGATCAACGAAGAGCGGGAGGACCGTCG CACCCTAGGCTTTGTTCTCCTCCGCGGCGAAGAAGTCGTGTCGATGACTGTCGAAGGCCCTCCTCCTCCGGAAGAATCGCGTGCCAAGTCGGTGGGTGCT CATGCCCTTTCCGGCACCGGCATCGGTCGCGGGGCCGGCCGTGGGATTCCGACGGCTCCTCTCGTTCAAGCTCAACCTGGACTCTCCGGACCTGTTCGAG GTGTTGGTGGCCCTGCCCCTGGAACGATGCAGCCTCAGATCTCGCGTCCTCCTGTCCCGAATATGTCTGCTCCGCCGATGAATTATCCGGTAGGTCAGCA AGCTGGTGGTCCACCGGTTATACGGCCACCTGGACAGATGCCTCAGATGCAGTTCCCTGGACCTCCGATGGCTCGTGGTCCTCCTCCGCCACAGTTTGCA GGTAGACCGCCGCAGCAGGGGTTTCCTATGCCTCCTCAGTTTGCTCAGAGACCGATGGGAATGCCGCCGCCGATGATGAGAGGACCACCTGGTCAACCGA GTCCAGGGATGCCGCCCAGGGATGCCTCCTCCTGGTAA
AA sequence Show only first row Show all	>Lus10023386 pacid=23181097 polypeptide=Lus10023386 locus=Lus10023386.g ID=Lus10023386.BGIv1.0 annot-version=v1.0 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLALGDCEEFRKLPPGKGKKINEEREDRRTLGFVLLRGEEVVSMTVEGPPPPEESRAKSVGA HALSGTGIGRGAGRGIPTAPLVQAQPGLSGPVRGVGGPAPGTMQPQISRPPVPNMSAPPMNYPVGQQAGGPPVIRPPGQMPQMQFPGPPMARGPPPPQFA GRPPQQGFPMPPQFAQRPMGMPPPMMRGPPGQPSPGMPPRDASSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44500			Small nuclear ribonucleoprotei...		Lus10023386 [exp]	0	1
AT3G49910			Translation protein SH3-like f...		Lus10019283 [exp]	2.4	0.9478
AT1G02140		MAGO, HAP1, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10029791 [exp]	3.0	0.9294
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10034378 [exp]	4.6	0.9311
AT5G07900			Mitochondrial transcription te...		Lus10041122 [exp]	4.9	0.9322
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10014049 [exp]	4.9	0.9228
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	5.7	0.9135
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	6.6	0.9476
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	8.0	0.9348
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10024950 [exp]	9.4	0.9264
AT5G05520			Outer membrane OMP85 family pr...		Lus10017441 [exp]	9.7	0.9326

Compare expression of checked genes

Lus10023386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.