Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 577 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 535 / 0 GRAS GRAS family transcription factor (.1) AT2G37650 524 / 2e-176 GRAS SCL9 GRAS family transcription factor (.1) AT2G29065 473 / 1e-157 GRAS family transcription factor (.1) AT5G59450 452 / 4e-150 GRAS SCL11 GRAS family transcription factor (.1) AT1G07520 455 / 5e-150 GRAS GRAS family transcription factor (.1) AT3G46600 429 / 2e-143 GRAS GRAS family transcription factor (.1.2.3) AT5G48150 230 / 6e-67 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 230 / 5e-66 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 220 / 4e-64 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040284 [exp] 1352 / 0 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 587 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10016521 [exp] 541 / 0 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 537 / 0 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 535 / 0 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10040787 [exp] 522 / 1e-176 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 504 / 1e-168 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 492 / 4e-164 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 468 / 5e-160 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G057400 [exp] 922 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.010G202300 [exp] 776 / 0 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 686 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 646 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 590 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 580 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 561 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033100 [exp] 545 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.001G242000 [exp] 529 / 2e-179 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.009G033300 [exp] 524 / 1e-176 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10023404 pacid=23160643 polypeptide=Lus10023404 locus=Lus10023404.g ID=Lus10023404.BGIv1.0 annot-version=v1.0 ATGCGCTCTGAAACAGAGCAGCTTTTTCACGCTCTTCCCGTTACTTTCAATCCTCTTTCTTTCTCCAAGTATTTCCCTCCTCCTCCTCCTCCTCCGCAGC ACTCCCCCCTTCTTCAGGATATAGAGAATTCCATGATGGATCAATCTTTAGGGGGATTGTTTGATTCTGTCAGTGGATTGAAGCTCAGCCATGAAGCGCT TTCAGCTTTAACTACTAGGAAACTCATTTCTGGGTTAAAATCAGACGACACTCTTATCAATAAGAATTTTGTACCGCGCAATGATCCTAGTATTAGCAAC GGCCAGGCAACGGTGCCTTCGAATCCAAACCAAGCTGTACAGTCGTCCCGTGATGATTTCGACTTCAACGATGTGGTTCTTAAGTATATTGATGATATGC TCATGGAAGAAAACATGGAGGAGAAAGCATGCATGTTTCAGGAGTCCTCAGCAGCACTTCAGGCTGCTGAGAAATCACTATATGAGCTTATTGGGGAAAG GTACCCACCGTTACCTGTTACTGAGCCGATACAACCTCACCCTGATCAATACCATGGTAGTTCAGATGATCAGCATGATTCAAATCGTCGAGTTTGTTCT AGTAACTCAAGCTGCATCAGTTCTGGTAGCAGTTTGATTGATTGTGGCCGGAGTTATGACGTGGATGAGTGTAGATCGTCCACTAGGAATGCTTCCTATT CTGTTTCACGTACAGCACAGAGCTCGGATTCTCCAGTGAGCACTATCATAATTCCCGACATGTTTACCGAATCCGAGTCTGCCGATCAGTTTAGGAGGGG GTTTGAGGAGGCAAGTAAGTTCATCCCCAGAGCTAGTTTGCTTTTTGACATGGAAAGTACCGGAATCTCTTTGAAAGACTTGAGGAAGCAGAATAAGGGA GAAGAAATCGAAGTGGTTAATAATAAACTTCAGAATAGCTTCTGTTTTGAGCAGGCAAGGGGGAAAAAGAACCCGCATCCCGAGTACCTGAACTTAGACG GAGCAGCAAGAAGCAGTAAACAATCAGCAGTTTCTTCGGAATCTACTGTGAGTTCAGAAGACTTCGACCGGATACTACTTAACTGCGCCCAAGATCCGGA ATCTACGCTTCGTGCAGCTATGGAGAGTGAGAAGAACAGGACAGCAATGCAGAATAAACTAACAAAATCGTCTAATGGTGGAAAAGCTCGAGGGAAGAGG CAGGGTGGAACTAAGAAAAACGTGGTGGATTTGAGGACACTCTTGACTCTTTGTGCACAGGCTGTTGCTGCCGATGATCGGAGGAATGCGAATGTTCTCT TGAAACAGATTCGGGATAATGCTCCCCCGACCGGGGATGGTATGCAAAGATTGGCTAGTATTTTCGCCGATGGATTGGAGGCAAGGATGGCTGGCTCCGG AACCAAAATTTACAAAGCACTGATCACAAAGGCGACCTCAGCTGCCGATGTATTGAAAGCATACCAGCTGTTTCTAGCTGCATGCCCATACAAGAAGCTG TCGAATTTTTTCTCGAACAAAACGATTATGAACTTGGCTCAACGTGCGAAGAGGCTTCACATTGTTGATTTTGGGATTCTGTACGGTTTCCAGTGGCCTT GCCTCATTCAGCGCCTATCGTCCATGCCTGGTGGACCACCGAAACTTAGAATCACAGGAGTCGATTTACCGAATCCAGGTTTCAGACCAGCCGAAAGGGT TGAGGAGACTGGCCGGAGGTTAGCAAACTACGCTAAGACATTCAATGTTCCATTTGAGTTCAATGCCCTTGCGCAGAAGTGGGACACTATTAAGATCGAG GATTTGAAGATCGAGAAGGATGAAGTGCTGGTGGTGAATTGCATGTACAGGTTGAGAAACTTGCTTGACGAGACTGTGGTGGTGGACTGCCCGAGGAATA TTGTTCTTAACCTAGTGAGGAGGATGAATCCGGAGGTTTTCATACTTGGTATCGTTAATGGATCGTACAGTGCTCCGTTCTTTATAACTCGGTTCCGGGA GGCACTTTTCCATTTCTCCACTGTGTTCGATATGCTGGAGACGACTGTGCCTCGTGATATGCCGGAGAGGATGCTGATCGAAAGGGATATTTTCGGCTGG GAGGCGATGAATGTGATTGCTTGTGAAGGTGCCGAGAGGCTGGAGAGGCCGGAAACGTACAAACAATGCCAAGTGAGAGCTCAAAGGGCTGGATTCTCAC AACTGCCTTTGAACAGGGAGATATTAACGACTGCGAAGGAGAAGGTGAAGGAAAATTACAACAAGGATTTTGTGATCGATGAGGATGGTGAGTGGCTTCT TCAAGGGTGGAAGGGGAGAATTGTTTATGCACTCTCTTCATGGAAGGCTAGTCCATAG
AA sequence Show only first row Show all	>Lus10023404 pacid=23160643 polypeptide=Lus10023404 locus=Lus10023404.g ID=Lus10023404.BGIv1.0 annot-version=v1.0 MRSETEQLFHALPVTFNPLSFSKYFPPPPPPPQHSPLLQDIENSMMDQSLGGLFDSVSGLKLSHEALSALTTRKLISGLKSDDTLINKNFVPRNDPSISN GQATVPSNPNQAVQSSRDDFDFNDVVLKYIDDMLMEENMEEKACMFQESSAALQAAEKSLYELIGERYPPLPVTEPIQPHPDQYHGSSDDQHDSNRRVCS SNSSCISSGSSLIDCGRSYDVDECRSSTRNASYSVSRTAQSSDSPVSTIIIPDMFTESESADQFRRGFEEASKFIPRASLLFDMESTGISLKDLRKQNKG EEIEVVNNKLQNSFCFEQARGKKNPHPEYLNLDGAARSSKQSAVSSESTVSSEDFDRILLNCAQDPESTLRAAMESEKNRTAMQNKLTKSSNGGKARGKR QGGTKKNVVDLRTLLTLCAQAVAADDRRNANVLLKQIRDNAPPTGDGMQRLASIFADGLEARMAGSGTKIYKALITKATSAADVLKAYQLFLAACPYKKL SNFFSNKTIMNLAQRAKRLHIVDFGILYGFQWPCLIQRLSSMPGGPPKLRITGVDLPNPGFRPAERVEETGRRLANYAKTFNVPFEFNALAQKWDTIKIE DLKIEKDEVLVVNCMYRLRNLLDETVVVDCPRNIVLNLVRRMNPEVFILGIVNGSYSAPFFITRFREALFHFSTVFDMLETTVPRDMPERMLIERDIFGW EAMNVIACEGAERLERPETYKQCQVRAQRAGFSQLPLNREILTTAKEKVKENYNKDFVIDEDGEWLLQGWKGRIVYALSSWKASP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10023404 [exp]	0	1
AT3G63500			Protein of unknown function (D...		Lus10016399 [exp]	5.3	0.8471
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10028630 [exp]	8.9	0.8428
AT5G11700			unknown protein		Lus10011144 [exp]	12.0	0.8436
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	13.5	0.8725
AT5G44090			Calcium-binding EF-hand family...		Lus10022907 [exp]	23.3	0.8200
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	28.3	0.8411
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	30.6	0.8394
AT1G36990			unknown protein		Lus10028037 [exp]	38.3	0.8276
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10033263 [exp]	41.1	0.8088
AT4G26980			RNI-like superfamily protein (...		Lus10032638 [exp]	43.0	0.8130

Compare expression of checked genes

Lus10023404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.