Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13550 879 / 0 SULTR4;1 sulfate transporter 4.1 (.1) AT3G12520 878 / 0 SULTR4;2 sulfate transporter 4;2 (.1.2) AT3G51895 361 / 2e-115 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G08620 358 / 3e-114 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 341 / 8e-108 SULTR1;3 sulfate transporter 1;3 (.1) AT1G23090 337 / 1e-106 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G15990 333 / 9e-105 SULTR3;4 sulfate transporter 3;4 (.1) AT1G78000 333 / 9e-105 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT4G02700 332 / 3e-104 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT5G19600 327 / 1e-102 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040319 [exp] 1164 / 0 AT5G13550 962 / 0.0 sulfate transporter 4.1 (.1) Lus10030321 [exp] 940 / 0 AT5G13550 830 / 0.0 sulfate transporter 4.1 (.1) Lus10003294 [exp] 596 / 0 AT5G13550 674 / 0.0 sulfate transporter 4.1 (.1) Lus10041111 [exp] 387 / 2e-125 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 373 / 1e-119 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 370 / 1e-118 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10025767 [exp] 340 / 2e-107 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10006612 [exp] 339 / 4e-107 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 332 / 1e-103 AT1G23090 953 / 0.0 sulfate transporter 91 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G049500 [exp] 986 / 0 AT5G13550 921 / 0.0 sulfate transporter 4.1 (.1) Potri.010G211400 [exp] 967 / 0 AT5G13550 898 / 0.0 sulfate transporter 4.1 (.1) Potri.005G167300 [exp] 376 / 5e-121 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 366 / 1e-117 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 353 / 2e-112 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 345 / 4e-109 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 343 / 8e-109 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.002G049500 [exp] 342 / 4e-108 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 339 / 5e-107 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.008G130400 [exp] 333 / 1e-104 AT1G23090 998 / 0.0 sulfate transporter 91 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10023440 pacid=23160485 polypeptide=Lus10023440 locus=Lus10023440.g ID=Lus10023440.BGIv1.0 annot-version=v1.0 ATGGACTCCTCCTCCACCTACGCATCCTCCAGCTCCATCGACATTTCTTCTTTTTCTCCATCCGCCATGCCCATCCCTGGCTTCTCCCGCCCTGTCAAGA TCATTCCTCTTCAGCACCCTTCCGCGGCTACCGCTGCTGCGTCATCCTCTTCTCCGGCCGATTTCTTCTCCAGTTTCGTCGCGAAATGTAAACGCCTCAC CTTCCTTCAGTTGATCGAGCGCCTCTTCCCCTGCTGCCGTTGGATTCGTGCCTACCAATGGAGCGAACATTTCCAGGTCGATCTCCTAGCCGGCCTCACC ATCGGTATCATGCTCGTTCCTCAGGCAATGTCTTACGCGAAATTAGCAGGGCTTGAACCAATTTACGGACTGTACACTGGTTTTGTCCCAATCTTTGTGT ATGCTATCTTTGGATCATCGCGGCAGCTGGCTATTGGTCCAGTGGCTCTTGTTTCTCTGCTGGTGTCTAATGTTCTAAGGGGAATTGCTGGTTCTTCCGA TGAGTTGTACACTGAACTTGCCATAGTACTGGCACTTATGGTTGGAATACTGGAGTGTATTATGGGGCTTTTGAGGCTCGGGTGGCTTTTACGTTTCATC AGCCACTCTGTTATATCTGGGTTTACAACTGCTTCAGCTGTTGTGATTGGACTATCGCAAGCAAAGTATTTTTTGGGATACAACATAACACAAAGCAGCA AGATTGTGCCACTGATTAAGAGCATAATTGATGGAGCAGACCAGTTCAAATGGCCTCCTTTCCTAATGGGATCTGGAATTCTTGCTGTACTTCTGATTAT GAAGCACTTGGGAAAATCGAGGAAGCAATTCAAGTTTCTTCGAGCTGCAGGTCCCTTAACAGGTGTCATTTTGGGGACCACATTGGCAAAAATATTTCAG CAGTCTATTTCATTGATAGGAGATATACCTCAGGGTCTTCCAAGCTTCTCAATTCCAAAGAATTTTGGGTATGCAAAGTCACTAATACCAACAGCATTTC TCATCACTGGCGTAGCAATATTGGAATCTGTGGGAATTGCCAAAGCCTTGGCTGCAAAGAACGGGTATGAACTGGATTCAAGTCAGGAGCTGGTTGGTCT TGGTTTGGCCAATATCTTTGGGTCTTTCTTCTCAGCATATCCATCAACAGGTTCCTTTTCCAGGTCAGCTGTCAGCAATGAGAGTGGAGCCAAAACCGGC TTATCTGGAGTCATTACTGGAATAGTTATGTGTTGTGCTCTATTATTCTTGACCCCCTTGTTCAAGTCTATACCACAGTGTGCTCTGGCTGCAATTGTTG TGTCTGCTGTGATTGGCCTGGTGGAGTATGAGGAGGCAATCTTCCTATGGCATGTGGATAAGAAAGATTTTGTCCTTTGGTTCATTACTTGCACCACAAC CTTGTTCCTCGGAATCGAGATTGGTGTTCTTATAGGAGTCGGTGTATCACTTGCTTTTGTCATCCACGAGTCTGCAAATCCACACATTGCTGTCCTGGGG CGACTTCCCGGCACCACTGTGTATAGAAATACTCAACAATACCCTGAAGCATATACATACCACGGAATCGTCATTGTCCGAGTTGATGCACCTATATATT TTGCAAATACAAGCTACATAAAAGACAGACTACGGGAATATGAACTTAAGGTCGACAAATCAACACGACACGGACCAGAAGTCGAAAGGATTCACTTCGT GATTCTGGAGATGTCCCCTGTTACATACATAGACTCAAGTGCTATCCAAGCTCTAAAAGACTTGTACCAAGAATACAAATCACGAGACATCCAGATTGCT ATTTCGAATCCAAACCGAGAAGTCCTATTAACACTGTCGAAATCTGGCATTGTGGAACTTATCGGAAAGGAATGGTACTTTGTTAGAGTACATGACGCGG TCCAAGTGTGCCTTCGACACGTCGAAAGCTTGCACCAAACTTCAAAAGAAACCAAACCCAGTTTGTATGAAAGGTTATTAAAACAGAGAGGAGACGGTAT AACTGCTGCTGACTTAGAAACTGGGCAGAGAGCAATTGCTTCCCGGAACGGGGACTCGAAATTGGAGCCATTGTTGTTGAAATAA
AA sequence Show only first row Show all	>Lus10023440 pacid=23160485 polypeptide=Lus10023440 locus=Lus10023440.g ID=Lus10023440.BGIv1.0 annot-version=v1.0 MDSSSTYASSSSIDISSFSPSAMPIPGFSRPVKIIPLQHPSAATAAASSSSPADFFSSFVAKCKRLTFLQLIERLFPCCRWIRAYQWSEHFQVDLLAGLT IGIMLVPQAMSYAKLAGLEPIYGLYTGFVPIFVYAIFGSSRQLAIGPVALVSLLVSNVLRGIAGSSDELYTELAIVLALMVGILECIMGLLRLGWLLRFI SHSVISGFTTASAVVIGLSQAKYFLGYNITQSSKIVPLIKSIIDGADQFKWPPFLMGSGILAVLLIMKHLGKSRKQFKFLRAAGPLTGVILGTTLAKIFQ QSISLIGDIPQGLPSFSIPKNFGYAKSLIPTAFLITGVAILESVGIAKALAAKNGYELDSSQELVGLGLANIFGSFFSAYPSTGSFSRSAVSNESGAKTG LSGVITGIVMCCALLFLTPLFKSIPQCALAAIVVSAVIGLVEYEEAIFLWHVDKKDFVLWFITCTTTLFLGIEIGVLIGVGVSLAFVIHESANPHIAVLG RLPGTTVYRNTQQYPEAYTYHGIVIVRVDAPIYFANTSYIKDRLREYELKVDKSTRHGPEVERIHFVILEMSPVTYIDSSAIQALKDLYQEYKSRDIQIA ISNPNREVLLTLSKSGIVELIGKEWYFVRVHDAVQVCLRHVESLHQTSKETKPSLYERLLKQRGDGITAADLETGQRAIASRNGDSKLEPLLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10023440 [exp]	0	1
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Lus10018689 [exp]	3.5	0.7592
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010801 [exp]	5.2	0.7401
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	5.5	0.7960
AT3G27030			unknown protein		Lus10041550 [exp]	6.6	0.7741
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	6.7	0.7579
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	13.2	0.7474
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	15.3	0.7506
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	17.4	0.7146
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	18.5	0.7402
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	24.0	0.7671

Compare expression of checked genes

Lus10023440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.