Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28550 130 / 9e-34 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT4G36920 117 / 7e-29 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 113 / 1e-27 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT5G60120 107 / 5e-25 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT2G39250 102 / 5e-24 AP2_ERF SNZ SCHNARCHZAPFEN, Integrase-type DNA-binding superfamily protein (.1) AT3G54990 91 / 2e-20 AP2_ERF SMZ SCHLAFMUTZE, Integrase-type DNA-binding superfamily protein (.1.2) AT1G16060 69 / 1e-12 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT5G57390 68 / 6e-12 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 67 / 7e-12 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G10510 67 / 9e-12 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040365 [exp] 589 / 0 AT2G28550 189 / 2e-55 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10026477 [exp] 130 / 9e-34 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041595 [exp] 128 / 1e-32 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 128 / 3e-32 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10018124 [exp] 124 / 7e-31 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10036141 [exp] 120 / 2e-29 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10023165 [exp] 118 / 2e-28 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019331 [exp] 115 / 8e-28 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10009374 [exp] 115 / 1e-27 AT4G36920 394 / 2e-134 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G045300 [exp] 155 / 5e-42 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.010G216200 [exp] 154 / 2e-41 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 134 / 2e-34 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 120 / 3e-29 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.007G046200 [exp] 119 / 9e-29 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 118 / 1e-28 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.003G185300 [exp] 72 / 9e-14 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.002G114800 [exp] 70 / 1e-12 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 68 / 5e-12 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 67 / 8e-12 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10023482 pacid=23160545 polypeptide=Lus10023482 locus=Lus10023482.g ID=Lus10023482.BGIv1.0 annot-version=v1.0 ATGAGCATCAACATCAACGGTCACCGGCAATCCAATTCCGGTCTGGATCTCAACCTAGACATCCTAACCCCTCAATACGACGCCGTTTCAAGAATTACTC CTCCTCCCAGCTGGAAGAAGAAGCTCAAATCATCATCAGGAGCTTTACTTATCATGGAGGCGCGTGTACCAGATCACGACGACGACGACGATAACAATTC CGCCGAAACTACTTCCGACTCTTCCTCCGTCATCATCAGCGCCTCCCCTCCAGCTCCCTGCTTCGACTTCAGATTCGATATCTTGACGAAGGACCCTGAT CAAACAACGCCGTTCCCGACAACCACCCGCCAGCTGTTCCCGGCCGAGATCGGCGGCGGCGGATCATCGGGACTGAAGAATTCGCAGCTGGCTGCTACTA CTAATAATAATCAGTGGCTGAAGTTGTCGTCGGAAGCAGACTCCTCGGCGACCACGACGACGACAACGGGAGGCGTCGGAGATCATAGACCGGTGACAAC GCCGGCGAGGAAGAGTAGGCGTGGGCCCAGGTCTAGAAGCTCCCAGTACCGTGGGGTCACTTTCTACCGGCGAACCGGCCGTTGGGAGTCGCATATATGG GCATATGATCGGGCTGCAATTAAGTTCCGGGGAGCGGATGCGGATCTGAACTTCAATTTAGCCGATTACGAGGAAGATATGAAGCATATGAAGGATTTGA GTAAAGAAGGATTTGTCCACGTACTTCGGCAACAGAACAAAGGTTTGTCAAGAGGGAACTCAAAGTACAAAGGACCAGGCGGCACCTTCCAGAAATGTGG CGCCTGGGAGGTTCGAATGGCCCACCATCTCCTTGTTCCCAACAAGGTTAACGGAAATGGAGTTGCAAGGTCAAGTTTGCAGCTACTTTATCCACTAGAC CGCCACAGTCACGACCTAGATCTAAAGTTGGGAATTTCTACTCCATCTCATGAATCAAAGAAGAATGCCATGGAAGCAAGGGTAGTACCATTTGTTGACA AACTTGTAAATCCCAACAAAGGTCATTTCGGATCACAAACGTTTAACGGCAGGCCAACTGTACTCCACAACTTCTCAACTTGGCCACTTCAATCATCGAG CATTGAGGGGAGCAACAGTAACATTTCGAGGGCAATTGCAAGAGGCTTCTCAGGCTGGACACAACCAGTGAACGTTGCAAAGAGCGATGGTGCTGCGAGC CGCGGCACGAAATGTTCTTCGACACTGCCGATTGCAGCATCATCAGGATTCCCTTCTACGGCTACTCACAGTCCCAAAACGCATATATCCGACACTAATT ACTCTTCTTCATCTAGTGTTCATACACTCCAACCCAGCCAGTACTTGTACTCTCAGAAAAGGGGACGCCAGTAA
AA sequence Show only first row Show all	>Lus10023482 pacid=23160545 polypeptide=Lus10023482 locus=Lus10023482.g ID=Lus10023482.BGIv1.0 annot-version=v1.0 MSININGHRQSNSGLDLNLDILTPQYDAVSRITPPPSWKKKLKSSSGALLIMEARVPDHDDDDDNNSAETTSDSSSVIISASPPAPCFDFRFDILTKDPD QTTPFPTTTRQLFPAEIGGGGSSGLKNSQLAATTNNNQWLKLSSEADSSATTTTTTGGVGDHRPVTTPARKSRRGPRSRSSQYRGVTFYRRTGRWESHIW AYDRAAIKFRGADADLNFNLADYEEDMKHMKDLSKEGFVHVLRQQNKGLSRGNSKYKGPGGTFQKCGAWEVRMAHHLLVPNKVNGNGVARSSLQLLYPLD RHSHDLDLKLGISTPSHESKKNAMEARVVPFVDKLVNPNKGHFGSQTFNGRPTVLHNFSTWPLQSSSIEGSNSNISRAIARGFSGWTQPVNVAKSDGAAS RGTKCSSTLPIAASSGFPSTATHSPKTHISDTNYSSSSSVHTLQPSQYLYSQKRGRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10023482 [exp]	0	1
					Lus10006286 [exp]	2.2	0.8654
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030890 [exp]	11.5	0.7455
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	13.3	0.8218
AT5G38790			unknown protein		Lus10003044 [exp]	15.4	0.7745
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10042332 [exp]	19.2	0.7679
					Lus10041677 [exp]	21.2	0.8049
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	22.2	0.7946
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Lus10005428 [exp]	23.2	0.7959
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	24.0	0.8134
AT4G27745			Yippee family putative zinc-bi...		Lus10033226 [exp]	26.3	0.8046

Compare expression of checked genes

Lus10023482 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.