Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51630 186 / 1e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G36930 163 / 2e-40 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G63860 157 / 8e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72890 140 / 5e-35 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT1G27180 144 / 3e-34 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 142 / 7e-34 transmembrane receptors;ATP binding (.1.2) AT1G66090 134 / 3e-33 Disease resistance protein (TIR-NBS class) (.1) AT1G72900 133 / 3e-33 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT5G17680 138 / 1e-32 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72940 130 / 1e-32 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040368 [exp] 1237 / 0 AT1G69550 219 / 1e-58 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10023272 [exp] 882 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10034697 [exp] 572 / 0 AT5G36930 300 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 566 / 1e-180 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10035674 [exp] 566 / 1e-178 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 521 / 1e-164 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 500 / 3e-156 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10026011 [exp] 496 / 9e-155 AT1G27170 423 / 5e-127 transmembrane receptors;ATP binding (.1.2) Lus10000331 [exp] 465 / 2e-144 AT5G36930 217 / 1e-57 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 201 / 2e-52 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 186 / 1e-47 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.T002400 [exp] 177 / 4e-45 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 176 / 3e-44 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 173 / 1e-43 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 173 / 1e-43 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 172 / 2e-43 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 171 / 4e-43 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 171 / 6e-43 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 171 / 1e-42 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10023487 pacid=23160561 polypeptide=Lus10023487 locus=Lus10023487.g ID=Lus10023487.BGIv1.0 annot-version=v1.0 ATGATCCATCTATCGCCTTCCTCAATAGAATTTGTTCAGCTTCCATCTATGGATCAGCAGCAGATATGGTCATTGTTTTGGGCACTAGCCGCAATTTTCT TGCCACTGGTAGTACTGCAATTTCTACTTTCAAAAAAAGTCTCCAAAATCTCAAACGATGCTTCGTCGTCTTCTTCTTCTTCAACACATTCAGAATCTCC TGCAGAAACGCCACAGTCTGCCGCGACGGAGTCGTACGAGGTCTTTCTGAGCTTCAGAGGCCCCGACGTCCGTACGAATTTCGCCGACGTTCTCTTCAAG TTCTTGGACCGTTACAAGATTCGGACGTTTCTCGACGATGAAGAGCTTCGTAAGGGAGAAGGAATCGCTCCTTCTCTTTTCGAAGCTATCAAGGAATCGG AGGTATACATTCCGATCCTCTCCCCTGATTATGCTTCCAGTAAATGGTGCCTTCAGGAGCTAGCTCTAATGGTGAAGTGCTGCAAGCAAGACGAAGCAAG TGGCCACCGCCGCCGCCGCCACATACTGCCGATTTTCTACATGATGAACCCTGGAGATGTACGGCACCAAGAAGGTTCTTACAAGAAGGCATTTCGATTG CACAGTCGAAAATATGATTCCAAGACTGTTGAGGAATGGAAGGCAGCTCTCAAGGAGGTTGGCGAAATGAAAGGATGGCACGTTACGGAATCTGATAGGC AAGGGGCTATTATGGAACAGGTTTCCTCTAAGGTGTGGTCACATCTTATGCGGAATTATATGCTGATGACTGATGAGTTGATTGGGATTGATCCTCATGT AGAACGAGTTACGAGACTACTTCTAAGCTCGGACTCTAACGGAGCAAAAATCGTCGGAATCCATGGTATGGGAGGTATTGGTAAGACAACTATAACCAAG GCTGTTTACAATGAGGTTTGTTCGCAGTTTGATCGCGTTTGCTTTGTGGAAGATGTACGAGAGATGTTGTTGAAGAGTAACGGTGTGATAAAGTTGCAGA GTTTGATTATCTCCAGCATTCTAAGAACTGATTACAAGATAGAGTCTGCAAGGACAAGGTCTTCATTGTTCTTGATGATAACTGATGTTGCTCCGAAAGA TGATGCAAAGGCGGTTCTATCTATGGAGTTTGTAAAAGTTGCTGCGGGGCTTCCTTTGGCTCTTAAGGTCATAGGGTCGCTTTTGTTTCGTAGGGAGAAT GAATTCTGGGTAGCAAAGTTGATTGAGCTTAAAGACATACCTCCCACCAAGTTGCAGGAAAGGTTGAAAATAAGTTACGACGAGCTAAGTCAGAATGAAA AACAAATCTTTCTTGATATTGCTTGTTGTTTGATCGGTGTAAAGAAGAGGTTCCCTTTCTACATGTGGAGTGATTGCAAGCTTTATCCTGAAAGTGGGAT CAACACTCTCCTGTTAAGATCGTTGGTGAAACTTAACGAGGAGAATGAGTTCTGGATGCATGATCACATCAGAGATCTCGGTAGAACAATTGTTCGAGAT GAAGATATTCGACACCCTTGGAAGCGCAGCAGAATATGGTCTAATGAAGATGCCCTGGAAATTTTGAAATGCCAGGAGGGAAGCGACTTGGTTGAAGTTC TTAAAGTTGACATGAGAGAAGAAGAACTTGAGCTCACAGATGAACAATTTAAGAAACTTCCAGGGTTAAGGTATCTCGAAGTATGTTACGGAAACGTAAC TGGAGATTTGACAGGAGTTCTTCCAAACATACGTTGGCTCAAGCTGAATGATTGTACTTCAATCCCCAGTGATGTCAATATGAAGAAGTTGGTTGTTCTT GACATGCAGAATTGCCCTGTGAAAGATGATTGGAGAGGATGGTGTGGAATTAAGGTAGCAAACAAGCTGAAAGCTGTAAAACTGTCACGTTGCGGGGAAT TGCGATCAGCTCCGGACTTGTCTAGATGTAGAGAGCTGGAGGTGATAGATCTCTTGAGCTGTTCAGAGATGGAAGGGGAACTGGACATTGGCAAATTCAA GAATCTGAAATGGTTGCAGTTCTATATGACCAAAATAACCAAGTTAACAGGTAACATTGGAATGCTTAAGGCTCTCAAATACTTGGTTGCAGAGAATCTG AGAGAGTTTCCTGCTGGTATTGGCAAATTGTCGTCTCTCGAAGTCTTGATTTTTCCATTTATTAGTTCACAGTTGACTGAACTAGCAGTCCTGCCCACAA GTTTAAAGCAGCTCTCCCTTTCGTCCTTGCGGGTTTCCAACCTTTCGGAGCTCAAGAACTTGGAGCTTCTACTCTTCAACGATTGCCATAAGCTACAACT TCTGGGAGGTATGTGGAAGCTATCCAAGTTGAAGTCTTTAAAGCTTATAGACTTGTCTTGCTGTGACAACCTACTTGAGGACGAGGACGAGGAAGGGAAT TGTCTTCCGTCATCTCTAAACTGCCTCAATATATGTGGTAGGACTAGTGAGCCATTGGAGAGACTGCCGAACTTTGCGAATCTGAATAACCTGACCGAGC TGCAACTGAGCCGGTTTAAGGTGCATGAGGTTCGAGGTTTGGGAGAGCTGAGAATGCTGGAATCTTTGTTGCTATTATCTGCTGAGAATCTAACCAATCT CGATGGCCTTGAAAGTCTATCGCGTTTGAAGAAACTCAATCTTGCAAACTGCTGTGTACTGGAAAGGTTGCCTAATTTGGCCAATTTGGCCAAGTTACAC GAAGTATGGATCGATTCGTGTCTGCTTCTCTCCGACATTCGAGGGCTAGGGGAACTAACAGAGTTCTCTCTATCTGATCTGTATATTTGTGACTGTCCCA TGTTAGACCACAATCCAAAGGAAGAAGGCCTTGGACTATCAATGGAACCGTTGGTTCCCTCTCTGTGGAAGATAGCCACATTGAAAACCCTAACGCTGTA TCTTTACGAGAGTGACAGTACTGATCGCCATCTCTCGTCTGGAGAACAATTCCTCGATGTCTCCGGTTTACGGGACATCAAGGAGATAAGAATCGTCGGG TTCAAACGGTTGAACAAGGTGTACGGGGTTAGGAAGTCTTTGGCATCCCTCGTTCTGTTAGATTGCACGTCCATCAGGGAGTTGCCCGATGGCCTCGAGA ATCTGCGCCATTTGAATATTGATGGATGCACGCATTTGGTCGAGATCAAAGGACTTGGTACATCTTTGAAGTCGTTGGACATGTCGGGCTGCATATCAGT CAGGAGTTTCCCGGACCACCTACCGCATCTAGAGAGCTTAGTTATCGACGATTGCAAACAGTTGACCAATGTAACAAGCCTGGAGAGGTTTGTGGCGTTG AGATCGCTGAGCATGAGGAATTGCACATCGGTGACCAAGTTGCCCGACTTGTCTGCTCTCGTAGATCTCAACAAATTGGAGATCCGCGGATGCACAGGTT TGACTGAGCTTACAGGGATTGAAGGATTGGAGTCACTGGAACGGCTGATTATGGCGGGGTGCTCTTCGGTAAAGGAGTTGCCTGATTTCTCCGGTCTGGA AAAGATCATGTTTCTGGATATTAGTGAATGCAAGCTGTTGAATGAGGTTGTTGGGATCGAAAACTTGTTGTCACTGGAAAACCTGACGATGAGGAATTGC ACATCAGTGAAGAAGTTGTCTGATCTGTCTGGCTGTAAGAAGTTGCATGGACTGGATATTACTGGATGCCTTCAGTTGGATCAAGTTTGCGGATTTGATA AATTGAAGCAGGGATTTGTAACAGTCACAAGATAA
AA sequence Show only first row Show all	>Lus10023487 pacid=23160561 polypeptide=Lus10023487 locus=Lus10023487.g ID=Lus10023487.BGIv1.0 annot-version=v1.0 MIHLSPSSIEFVQLPSMDQQQIWSLFWALAAIFLPLVVLQFLLSKKVSKISNDASSSSSSSTHSESPAETPQSAATESYEVFLSFRGPDVRTNFADVLFK FLDRYKIRTFLDDEELRKGEGIAPSLFEAIKESEVYIPILSPDYASSKWCLQELALMVKCCKQDEASGHRRRRHILPIFYMMNPGDVRHQEGSYKKAFRL HSRKYDSKTVEEWKAALKEVGEMKGWHVTESDRQGAIMEQVSSKVWSHLMRNYMLMTDELIGIDPHVERVTRLLLSSDSNGAKIVGIHGMGGIGKTTITK AVYNEVCSQFDRVCFVEDVREMLLKSNGVIKLQSLIISSILRTDYKIESARTRSSLFLMITDVAPKDDAKAVLSMEFVKVAAGLPLALKVIGSLLFRREN EFWVAKLIELKDIPPTKLQERLKISYDELSQNEKQIFLDIACCLIGVKKRFPFYMWSDCKLYPESGINTLLLRSLVKLNEENEFWMHDHIRDLGRTIVRD EDIRHPWKRSRIWSNEDALEILKCQEGSDLVEVLKVDMREEELELTDEQFKKLPGLRYLEVCYGNVTGDLTGVLPNIRWLKLNDCTSIPSDVNMKKLVVL DMQNCPVKDDWRGWCGIKVANKLKAVKLSRCGELRSAPDLSRCRELEVIDLLSCSEMEGELDIGKFKNLKWLQFYMTKITKLTGNIGMLKALKYLVAENL REFPAGIGKLSSLEVLIFPFISSQLTELAVLPTSLKQLSLSSLRVSNLSELKNLELLLFNDCHKLQLLGGMWKLSKLKSLKLIDLSCCDNLLEDEDEEGN CLPSSLNCLNICGRTSEPLERLPNFANLNNLTELQLSRFKVHEVRGLGELRMLESLLLLSAENLTNLDGLESLSRLKKLNLANCCVLERLPNLANLAKLH EVWIDSCLLLSDIRGLGELTEFSLSDLYICDCPMLDHNPKEEGLGLSMEPLVPSLWKIATLKTLTLYLYESDSTDRHLSSGEQFLDVSGLRDIKEIRIVG FKRLNKVYGVRKSLASLVLLDCTSIRELPDGLENLRHLNIDGCTHLVEIKGLGTSLKSLDMSGCISVRSFPDHLPHLESLVIDDCKQLTNVTSLERFVAL RSLSMRNCTSVTKLPDLSALVDLNKLEIRGCTGLTELTGIEGLESLERLIMAGCSSVKELPDFSGLEKIMFLDISECKLLNEVVGIENLLSLENLTMRNC TSVKKLSDLSGCKKLHGLDITGCLQLDQVCGFDKLKQGFVTVTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10023487 [exp]	0	1
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10026528 [exp]	1.4	0.9156
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10013816 [exp]	5.1	0.8804
AT1G58025			DNA-binding bromodomain-contai...		Lus10037368 [exp]	5.3	0.8532
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	5.8	0.8497
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10026448 [exp]	7.5	0.8482
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Lus10018963 [exp]	9.9	0.8746
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	11.7	0.8274
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10006218 [exp]	12.4	0.8245
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	15.8	0.8687
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	16.5	0.8497

Compare expression of checked genes

Lus10023487 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.