Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52250 527 / 5e-159 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040386 [exp] 2893 / 0 AT3G52250 573 / 2e-175 Duplicated homeodomain-like superfamily protein (.1) Lus10036515 [exp] 1346 / 0 AT3G52250 541 / 2e-164 Duplicated homeodomain-like superfamily protein (.1) Lus10041413 [exp] 1201 / 0 AT3G52250 545 / 2e-166 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220000 [exp] 1139 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1) Potri.008G041900 [exp] 1083 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023504 pacid=23160615 polypeptide=Lus10023504 locus=Lus10023504.g ID=Lus10023504.BGIv1.0 annot-version=v1.0 ATGCCGCCGGAGCCATTTTCGTTGGACCGGAAGAAGCACGAGAGGTCCGAGTCTTCCTCCTCCTCTTTGGGTTCTGCACCGCGATGGAGGGAGTGGTCAT CGGGTCATTATGGACCCTACCGCGAGCTTGGCCCTCGATGGGCAGGAGGATCCGGCGAGCTCCGCAGACCTTCCGGTCATGGCAAGCAGGGCTGGCACCT TTCTCCTGAACAATCTGGTTATGGGTATACCCGCTCCCGGTCTAGCGACAGGATGCAGGAAGACGAGAATGGCAGACTACCCTTTTCACGTGTAGATGGA AAATATGGTCGGACAAGTAGAGATAACAGGGGGCTTTCTGGCCCGAGAGACTGCAAAACTCATTCATGGGAGATTAGCAATGGATCTCCTATTGGACCTG GAAGATCTCATGATGTGAGTAATGGTCAGAGGTCAGTTGATGATATGCTAACACACCCTCCTTATTCTGACTTTGTGAACACATGGAATCAGCTTCAGTT GAAAGAGCATCACGACCGTAATAATGAGCAGGGTACTAATGTTTTGACTTCGGGCCAAAGGGGTGAGAAAGCGAACTCACTGGATTGGGAGCCTCTTAAA TGGGCTCGGGGAGGAAGCTTGTCTTCTAGGGGCTCTGGATTTAGGTACTCAAGTAGTTCGAAGAGTATTGGGGCAGTGGATTCCAATGGAGGGAAGAATG AGGTGCTGCCGCTAGACAATGTAACTTCAATTCAGTCCCCTTCAAGAGATGCTGCTGCTACTGACGGTAATTCTGCAGCACCTTCCGACGAGACAACCTC TAGGAAGAAGCCACGCCTTACTTGGGGCCAGGGCCTGGCAAAATTTGAGAAGAAGAGAGGGGAAGGCCCTGAGATTAGTGGTACTAGAGATGATAGACCC TTGTTTGCGATGAATGCTGACCCTGTTCACTCTCAAAGCTCAAGCCTGGTTGACAGAAGCCCTAGACTGATGGGTTTTCCAGATTCTCCTGCAACTCCTT CGTCTGTTGCTTGTAGTTCCTCACCAGGCACAGAAGAGAAATTTCCGGTGAAGGCTTTAGGTATTGATAATGATGCAAGTAATCTATATGGTTCTCCTTA TGCTAACTCTCAAAGTCATCTTGAGGAATTATCTCTTGATATAGAAAAGTTGGATTCGAGCCTAATCACTACTCTGGGGTCCTCGCTCACCGAGATGATA CAGTCGGACAATTTATGCTCTGCGGACTCGAGTTCTGTGAAGTTAGCTGGAATGAGAAAATTACTTGTTTGGAAAGGTGATGTCTTGAAGGCATTGGAAA CAGCAGAGTCTGAGATTGATATGCTTGAAAATGAACTCAAGTTGCTGAAGTCTGATTCAAAAAGCAAGCTTTCCTGTCCATCACCATCCAGTTCCTTGTT AAATGGGGGTGCTATTGTTTGCAATGAACTTAAAAATGTATCTGGCAATGCTCTCTGTCGTCCTTCTACGCTCAAAGTTGTATCCAGTAGGGATGAGATT CATAATTCTGATGATTCTTTTGATGGTGATGGTGGTGCCAAGGATGATGCTGATAGTCCTGGGACTGCTACATCAAAGTTTGTCGAACTTGTATCATCAA CTAGGATTTCTTCTGAGATGTTGATATGCGATGAACAATCTGGTTTGTGTCCTGCCGAACATTCAAGTCTGGACTTGAAAGTTGCAGTGCCTGTGGCGCA AGAGAAAGACTTTCCTGTTTCAGCTTCTGAGGTTAACTTTCTTGTACATTGCAACACTAGTAAACCTGTATATGCTAGTAGGAGCTCTGTGGCAAATGGG GAAGATTATCTGTGTACTGCTATATTGTCATCAAACAAGGTATCTGCTTCTGCAGCGGCTGACGAGTTCAATAGGTTATTGCCCAGTGATCCTTGCTCAG TTGATTGTTCAAGAGTTGCCAATATATTGTCGTTGCAATATGATGCTTTGATTGAGCAAATTTTTTTGATGAGGAAACGACCTATAAAGTTAAAGGAGAA AGTGGTGGCATTGAAGTTCAAAGCCTTTCAACATTTGTGGAGGGAGGATATGCGGTCACTTTCTGTGAAAAAATCCAAGTCAAAGTTCCAGAAGAAGTTT GAGTCAAGCTCGCGACCTATATTTCATATGGATAAAAAGCATCGATCCTCATCTCGCTTGCGGGTCTGTTTGTCTGGAAATTTGGGTTTGGTTCCTTCGC CAGATGTTCTGAAATTTACAAGGAAGTTGCTTGCAGATTGCAATGTCAAAGTTTACAGGGATAAATTGAAAATGCCAGCACAGATTCTGGATGAGAAGGA GAAAGTAGCTTCACGGTTTATATCTGGCAACGGATTAGTTGAAGATCCCTGTGCTGTTGAAAGGGAAAGGGCTATGATTAACCTCTGGACTTCAGAAGAG CGACAAATTTTCATTAATAAACTAGCCTCTTGTGGTAAAGATTTCAAGAAAATTGCTTCTTTTCTTGAACACAAGACAACTGCAGACTGTGTTGAATTTT ACTACAAAAATCACAAGTCTGAATCTTTTGGGAAAATGAAGAAAAACAAGCAATCTAACTCTTCTGCGAACTACTTGATGTCATCAAATAAGAAGTGGAA TCGGGAGATGAATGCAGCCCCACTTGAAATTTTGAGTGCTGGCTCAGTGCTGGCTTCTGATTCTGGCCGAAGTATGGCAAGCAGGAAGATGCAAACAGGT AGAATGTTGATAAGAGGCCCTGGTAATTGCACAATCATGGAGGATGGTGACTGTAATTCAGACAGATCAAACAATTATGATATGATTGTCAGTGAAAGAG AAACAGCTGCTGCTGACGTTCTTGCTGGTATTAGTGGTTCTGTAAGTTCTTGTATTACTACAGCAGATCGTGGGGAGGGATTCCATGAATTCAAGTCCCA AAAGAGAGCTACTGTGGACAGATGCGTATCCTTATCTGATGCTACCCAGAGTGTAGATGAAGAGACCTGCTCTGATAATAGTTGTGGGGAAATGAATCCT GCTGATTGGACAGACAAGGAGAAATCAGCTTTTGTTCAGGCTGTTTCTTTGTATGGAAAGAATTTTGCACTCGTCTCTCGCTGTGTCCAGACAAGATCTC AGGATCAGTGCAAAGTGTTCTTTAGCAAATCAAGGAAATGTCTAGCGCTGGATCAGATCCAGTCTTGTAAAGATGTGGTAGGTCCGTCAGTAGTGGAGGA TGCTAGTGGAGGTGGTAGTGACATGGAACATGGTAACGTCTTGGAGAAAGGCTTAAACAAACCCTCTTCTGAGGTAGACTGTGATCTGCCCTCCTCAGAT ATGTTCACTGCTGGGGTTTCAAACCTTGAAAGTAACCTGCATATATCTGAGGATAAAGAAGTTGCTGGAGCAATGGAGGTGGCAGGTTTGCTGAATGCAA ATGCTCTGGTTTCTGATTGTCCAAAGGATCATCTGCTGCAGTCAAGTCTACTGGCTGATGGTGAAGTCATTAATGGGTCAGAAAGTTCTATCAAAGGCCA AAAAGTCCGAATAGAACCTGGTGTTATCGAAAGTGAAAAAGATCGTGGGGCAAGCGATGGATTTGCCAATTCTGGCATTGCTGAAGATGTAGTTGACTCT GCTCCAACCAACCTAGTTTCCTCCTTCGAGGATGAAGCTAGGAAAGAAGTCCCTGTTAGTTTAGGTAACCAAGAAATTTCATTTCCCCATCCCAAGACTA GTAGCCAAAGTTTGATACAAGATTTGAATACAACCAAAGAAGTCCAACATCCTCCTTGGGACATGGGCTCTTCAAATGACGGTCATGGCGTGGAAAATAT CAATCAGAGACAAGTTGAAGTGAATTCTGTGGAGACTAGTGCAGCAATGTCATTGCCGATGGAAAGTAATATGGCCAGCACTGATTCTGTGATACAGGAC TCTGCTGCTGTGCATGATTCAGGTGGTATATCAGCTAGTGTTGATGTCCATCAGAATGGTGAGAGGGATGATGCAAAGTTCTATGAAAATGGCGATGTGC TGCATTTGCTGAGCGTTGGGGAATCTTCTCAGATCATTACCAAGCAGTTTGTGGCTGAGGGCCCCCATCTCCAGAAGCCCAGCAATTCGGAAGGTCAGTG CTCGGCGACTGAGCTTTCTCTTTTGAGCCAACACTCTGAACAAGTAAATAGACAGTCTCACAGCTCTTCAGACATGGAAAAACCATGTAGGAATGGTGAT GTAAAGCTCTTTGGCAAAATACTCAGTAATACTGCATCATCATCACACAAGCCTAATACTGAATATGGGAAGGATGGAAAAAGCAGCCATCCTGTCGAGA CGGGCAGCCCGGCGACCTTGAACTTCACTGGTCATCCCAGTACAGATGGAAATGCCACTTTGCTGAATTTTGATCCGAACAGTTGTGCGGGGTCGGAGAA TCTTCTTCCTCAAAGAAGTTATGGGTTATGGGATGGGAGGAGAATACGGATGGGGGTTTCATCGTTGCCTGATTCAGCCATCTTACTGGCTAAATATCCT GATGCATTTAGCAACTACCAGGGACACCCGGCCAAGATTCTTACAAACAGCGAACGAAGTATAAATGGCCTACTGAAATTCCCATCAAGGGATGCAGGTA GCAGCAGCACTGCCCTTCTGGATCTTCAGAGGTACATAACTCAGGATGCCAACAAATTTAAGCCATTCGCTCTTGAACGGCAGGAAGTACTTGATTTACA GGCACGAAAAGGGTTTGATTCAATTCCCAGTTTGCAGCAGCAGGGGAGGGCAATGGGAGGTGTCCTTATTGGCGGGCCATGCCAGGCCATTTCGGATCCT GTTGCTGCAATCAAGATGCATTTCGCAAAGACCGATCGAGTTGGGGTCCAAAGTGGCACGGTCAATCCGAGACAGGATGAGCCTTGGAGAGGACAGGGGG ATGCGAGGAGATAG
AA sequence Show only first row Show all	>Lus10023504 pacid=23160615 polypeptide=Lus10023504 locus=Lus10023504.g ID=Lus10023504.BGIv1.0 annot-version=v1.0 MPPEPFSLDRKKHERSESSSSSLGSAPRWREWSSGHYGPYRELGPRWAGGSGELRRPSGHGKQGWHLSPEQSGYGYTRSRSSDRMQEDENGRLPFSRVDG KYGRTSRDNRGLSGPRDCKTHSWEISNGSPIGPGRSHDVSNGQRSVDDMLTHPPYSDFVNTWNQLQLKEHHDRNNEQGTNVLTSGQRGEKANSLDWEPLK WARGGSLSSRGSGFRYSSSSKSIGAVDSNGGKNEVLPLDNVTSIQSPSRDAAATDGNSAAPSDETTSRKKPRLTWGQGLAKFEKKRGEGPEISGTRDDRP LFAMNADPVHSQSSSLVDRSPRLMGFPDSPATPSSVACSSSPGTEEKFPVKALGIDNDASNLYGSPYANSQSHLEELSLDIEKLDSSLITTLGSSLTEMI QSDNLCSADSSSVKLAGMRKLLVWKGDVLKALETAESEIDMLENELKLLKSDSKSKLSCPSPSSSLLNGGAIVCNELKNVSGNALCRPSTLKVVSSRDEI HNSDDSFDGDGGAKDDADSPGTATSKFVELVSSTRISSEMLICDEQSGLCPAEHSSLDLKVAVPVAQEKDFPVSASEVNFLVHCNTSKPVYASRSSVANG EDYLCTAILSSNKVSASAAADEFNRLLPSDPCSVDCSRVANILSLQYDALIEQIFLMRKRPIKLKEKVVALKFKAFQHLWREDMRSLSVKKSKSKFQKKF ESSSRPIFHMDKKHRSSSRLRVCLSGNLGLVPSPDVLKFTRKLLADCNVKVYRDKLKMPAQILDEKEKVASRFISGNGLVEDPCAVERERAMINLWTSEE RQIFINKLASCGKDFKKIASFLEHKTTADCVEFYYKNHKSESFGKMKKNKQSNSSANYLMSSNKKWNREMNAAPLEILSAGSVLASDSGRSMASRKMQTG RMLIRGPGNCTIMEDGDCNSDRSNNYDMIVSERETAAADVLAGISGSVSSCITTADRGEGFHEFKSQKRATVDRCVSLSDATQSVDEETCSDNSCGEMNP ADWTDKEKSAFVQAVSLYGKNFALVSRCVQTRSQDQCKVFFSKSRKCLALDQIQSCKDVVGPSVVEDASGGGSDMEHGNVLEKGLNKPSSEVDCDLPSSD MFTAGVSNLESNLHISEDKEVAGAMEVAGLLNANALVSDCPKDHLLQSSLLADGEVINGSESSIKGQKVRIEPGVIESEKDRGASDGFANSGIAEDVVDS APTNLVSSFEDEARKEVPVSLGNQEISFPHPKTSSQSLIQDLNTTKEVQHPPWDMGSSNDGHGVENINQRQVEVNSVETSAAMSLPMESNMASTDSVIQD SAAVHDSGGISASVDVHQNGERDDAKFYENGDVLHLLSVGESSQIITKQFVAEGPHLQKPSNSEGQCSATELSLLSQHSEQVNRQSHSSSDMEKPCRNGD VKLFGKILSNTASSSHKPNTEYGKDGKSSHPVETGSPATLNFTGHPSTDGNATLLNFDPNSCAGSENLLPQRSYGLWDGRRIRMGVSSLPDSAILLAKYP DAFSNYQGHPAKILTNSERSINGLLKFPSRDAGSSSTALLDLQRYITQDANKFKPFALERQEVLDLQARKGFDSIPSLQQQGRAMGGVLIGGPCQAISDP VAAIKMHFAKTDRVGVQSGTVNPRQDEPWRGQGDARR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	1.0	0.9873
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	1.4	0.9669
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10021336 [exp]	2.0	0.9385
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	3.7	0.9283
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	5.7	0.9346
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10033928 [exp]	6.0	0.9441
AT3G54440			glycoside hydrolase family 2 p...		Lus10039520 [exp]	8.9	0.9272
					Lus10013097 [exp]	9.5	0.9030
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	10.5	0.9203
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10014166 [exp]	11.2	0.9214

Compare expression of checked genes

Lus10023504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.