Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12420 456 / 2e-154 SKU5 Cupredoxin superfamily protein (.1.2) AT5G48450 448 / 9e-151 SKS3 SKU5 similar 3 (.1) AT1G21850 441 / 5e-149 SKS8 SKU5 similar 8 (.1) AT4G22010 439 / 3e-148 SKS4 SKU5 similar 4 (.1) AT1G76160 435 / 6e-147 SKS5 SKU5 similar 5 (.1) AT5G51480 434 / 8e-146 SKS2 SKU5 similar 2 (.1) AT1G21860 427 / 5e-144 SKS7 SKU5 similar 7 (.1) AT1G41830 419 / 2e-140 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G25240 417 / 3e-139 SKS1 SKU5 similar 1 (.1) AT5G66920 408 / 2e-136 SKS17 SKU5 similar 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040424 [exp] 923 / 0 AT5G48450 468 / 5e-159 SKU5 similar 3 (.1) Lus10037941 [exp] 676 / 0 AT4G12420 519 / 2e-179 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 446 / 1e-150 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031143 [exp] 444 / 7e-150 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10025860 [exp] 445 / 8e-150 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10031722 [exp] 440 / 2e-148 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10038239 [exp] 439 / 1e-147 AT5G48450 858 / 0.0 SKU5 similar 3 (.1) Lus10028921 [exp] 437 / 5e-147 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 436 / 2e-146 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032200 [exp] 732 / 0 AT4G12420 472 / 2e-160 Cupredoxin superfamily protein (.1.2) Potri.008G032100 [exp] 698 / 0 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1) Potri.002G021000 [exp] 456 / 5e-155 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.003G112700 [exp] 454 / 1e-153 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 451 / 2e-152 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.012G126400 [exp] 450 / 7e-152 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.014G177700 [exp] 447 / 7e-151 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.004G010100 [exp] 444 / 2e-150 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.002G227600 [exp] 443 / 5e-150 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 441 / 3e-149 AT1G76160 878 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10023539 pacid=23160557 polypeptide=Lus10023539 locus=Lus10023539.g ID=Lus10023539.BGIv1.0 annot-version=v1.0 ATGGTGTTCTCTGGAGCTGCTGCTCTTCTTCTTCTCCTGATCAGTACGGCGCTGATAATCGTCAATGGCGAGGAGATCTTCCTCGAATGGCACTTGGCGC TCGACTCGAGCATCAGACCTGCCTCCGTCGACCAACCCGTCATTACAATCAACGGTAAATTCCCAGGACCGCTGATCAACGCCACCACCAACGACAACAT CCACGTCAATGTGTTCAACATCATCGACGAGCCTGTCCTCTTCACCTGGAATGGGATTCAGCAGAGGCTGAACTCGTGGCAGGACGGAGTGTCAGGAACA AACTGTGGGATCCAGTCGGGGAAGAACTGGACATTTGTGTTTCAGGTGAAGGACCAGATCGGATCCTTCTTCTACTTCCCGTCCTTGAACTTCCAGAAGG CTGCCGGAGGGTTTGGTCCGATTCGTGTCAACAATCGAGTTGTTATCGCTGTTCCTTTTCCTCAACCTGACGATGATTTCGACCTTCTCATCGGTGACTG GTATACTTCCAGCTACAAGGAGGTCAGGAGGATGCTTACCAACGGCACAACGGAATCACATCAAAATATGGCAATGCTTATGAATGGGAAAGGTTCATAT CTGAATTCGTCTACACAAGCATATGAATCTTTCACCGTCGCTAAAGGGAAGACTTACAGGTTCAGGGTGTCAAACGTGGGGATGTCAAGTAGTTTCAACT TCAGAATCCAAAATCACAGGATGGTAGTGGTCGAAACAGAAGGATCTTACACAGATCAGACATCGGTGGACTCTTTAGATGTGCATGTAGGACAATCTTA CTCCGTTCTCGTCACAGCGGATCAAGCAGTGGCCGATTATTACATCGTGGCTTCCCCTAAGTTGGCCGCCGAAACTGGACTTATGGGCGTCGGAGTCCTG CATTACGACGGATCATCAACTAATGCTACAGGACCGATCCCCGGTGGCCCTGACCCTTTCGATCTTCAGTTCTCTGTTGATCAGGCCAAATCTATCAAGT GGAATTTAACAGCAGGGGCAGCGAGGCCGAACCCACAAGGGAGCTTCAACGTCTCAAATGTGACAATATCACAGACATTTATGCTTAGGGGATCTAAGTC GTCGTCACAAGAAACGAAAAACGGTGTCGTTTACTACACAGTTAACGATGTCTCCTACACAACTCCGGACACTCCATTGAAACTCGCCGATCTCTACAGT AATGGCTCCGGCGTATACACCCTCGACCAGTTCTCGACCAACTCTTCTTCTGACGGCAGCAGTGATTTCCAACGGGGAGTATTTGTCGCCTCCGGGGAAC ACAGAGGGTGGCTAGAGCTAGTGCTCATCAATACCTTTGTCGGTATAGATTCCTGGCACTTGGATGGCTATGGCTTCTTTGTTGTTGGGTACGGATTCGG GAACTGGACTCCATCGTCTCGTGCATCTTATAACATTTATGATCCGGTTGTTCGATCAACCGTTCAGGTGTACCCAAAAGGATGGACAGCAGTGTATGCA TACTTGGACAACCCAGGAATGTGGAACCTAAGATCTCAGAAACTAAGGAATTGGTACTTGGGACAAGAGCTCTATCTAAGAGTCTATGATCCAGATCCCA ACCCTGCCAAAGAATTTCCTCAACCATCCAACCTTCTTCTTTGTGGAATTTACAGCAATTCAACTGCACCACCACCTCCTAGTTCCCCTAACTCAGCTCC TCCCCCATCTCCTTCTCATGCATCTTTTCATCACTTCCCATGGTTCCAAAGCTGTATGGTGACCATGATGGCAACCTTGTACATGATCTACCAATGGCAA TACTAA
AA sequence Show only first row Show all	>Lus10023539 pacid=23160557 polypeptide=Lus10023539 locus=Lus10023539.g ID=Lus10023539.BGIv1.0 annot-version=v1.0 MVFSGAAALLLLLISTALIIVNGEEIFLEWHLALDSSIRPASVDQPVITINGKFPGPLINATTNDNIHVNVFNIIDEPVLFTWNGIQQRLNSWQDGVSGT NCGIQSGKNWTFVFQVKDQIGSFFYFPSLNFQKAAGGFGPIRVNNRVVIAVPFPQPDDDFDLLIGDWYTSSYKEVRRMLTNGTTESHQNMAMLMNGKGSY LNSSTQAYESFTVAKGKTYRFRVSNVGMSSSFNFRIQNHRMVVVETEGSYTDQTSVDSLDVHVGQSYSVLVTADQAVADYYIVASPKLAAETGLMGVGVL HYDGSSTNATGPIPGGPDPFDLQFSVDQAKSIKWNLTAGAARPNPQGSFNVSNVTISQTFMLRGSKSSSQETKNGVVYYTVNDVSYTTPDTPLKLADLYS NGSGVYTLDQFSTNSSSDGSSDFQRGVFVASGEHRGWLELVLINTFVGIDSWHLDGYGFFVVGYGFGNWTPSSRASYNIYDPVVRSTVQVYPKGWTAVYA YLDNPGMWNLRSQKLRNWYLGQELYLRVYDPDPNPAKEFPQPSNLLLCGIYSNSTAPPPPSSPNSAPPPSPSHASFHHFPWFQSCMVTMMATLYMIYQWQ Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10023539 [exp]	0	1

Compare expression of checked genes

Lus10023539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.