Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39250 123 / 4e-38 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) AT2G21650 121 / 3e-37 MYB RSM1, ATRL2, MEE3 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) AT1G75250 108 / 4e-32 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) AT1G19510 91 / 2e-25 MYB RSM4, ATRL5 RADIALIS-LIKE SANT/MYB 4, RAD-like 5 (.1) AT2G18328 79 / 1e-20 MYB ATRL4 RAD-like 4 (.1) AT5G58900 81 / 1e-19 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 76 / 1e-17 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT4G36570 69 / 5e-17 MYB ATRL3 RAD-like 3 (.1) AT3G11280 72 / 2e-16 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G05790 71 / 8e-16 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040453 [exp] 186 / 7e-63 AT2G21650 115 / 4e-35 RADIALIS-LIKE SANT/MYB 1, MATERNAL EFFECT EMBRYO ARREST 3, ARABIDOPSIS RAD-LIKE 2, Homeodomain-like superfamily protein (.1) Lus10010831 [exp] 116 / 2e-35 AT1G75250 108 / 6e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10007152 [exp] 115 / 6e-35 AT1G75250 113 / 3e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10041752 [exp] 114 / 2e-34 AT1G75250 103 / 2e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10033212 [exp] 112 / 3e-33 AT1G75250 107 / 2e-31 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10002538 [exp] 110 / 8e-33 AT1G75250 112 / 1e-33 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10014301 [exp] 107 / 1e-31 AT1G75250 102 / 5e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10026009 [exp] 105 / 2e-31 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Lus10028306 [exp] 105 / 6e-31 AT1G75250 103 / 1e-30 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035000 [exp] 125 / 5e-39 AT1G75250 122 / 5e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.004G155866 [exp] 120 / 9e-37 AT1G75250 113 / 5e-34 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G117200 [exp] 114 / 1e-34 AT4G39250 109 / 1e-32 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.004G155400 [exp] 114 / 2e-34 AT1G75250 124 / 4e-38 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.009G116600 [exp] 113 / 3e-34 AT4G39250 120 / 4e-37 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.005G122200 [exp] 112 / 7e-34 AT4G39250 112 / 3e-34 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1) Potri.005G228000 [exp] 106 / 1e-31 AT1G75250 115 / 5e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G023800 [exp] 105 / 3e-31 AT1G75250 116 / 2e-35 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.002G260000 [exp] 101 / 2e-29 AT1G75250 108 / 3e-32 RADIALIS-LIKE SANT/MYB 3, RAD-like 6 (.1.2) Potri.007G025200 [exp] 92 / 8e-26 AT4G39250 99 / 1e-28 RADIALIS-LIKE SANT/MYB 2, RAD-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023568 pacid=23160499 polypeptide=Lus10023568 locus=Lus10023568.g ID=Lus10023568.BGIv1.0 annot-version=v1.0 ATGGCAACAAGCTCAATGTCAGCAAGAGGATCAGGGGGGAGCTGGACAGCAAAGCAGAACAAGGCATTTGAGAAGGCACTGGCTGTGTACGACAAGGACA CACCTGACAGGTGGTCTAATGTCGCCAAGGCTGTTGGTGGGAACAAGACCCCTGAGGATGTCAAGCTCCACTATGACCTCCTTGTCGAAGACGTCAAGTT CATTGAGTCTGGCAATGTCCCTTTCCCTAACTACACCGCCACTTCCTCCCTCGTCTCCGATGAAGAAAAGAGGATGAGGAACATGAAGCTGCGTTGA
AA sequence Show only first row Show all	>Lus10023568 pacid=23160499 polypeptide=Lus10023568 locus=Lus10023568.g ID=Lus10023568.BGIv1.0 annot-version=v1.0 MATSSMSARGSGGSWTAKQNKAFEKALAVYDKDTPDRWSNVAKAVGGNKTPEDVKLHYDLLVEDVKFIESGNVPFPNYTATSSLVSDEEKRMRNMKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	2.4	0.9794
					Lus10036765 [exp]	3.5	0.9794
AT2G16190			unknown protein		Lus10011284 [exp]	4.2	0.9794
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	4.9	0.9794
					Lus10006395 [exp]	5.5	0.9794
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	6.5	0.9651
AT5G19450		CPK8, CDPK19	calcium-dependent protein kina...		Lus10009947 [exp]	8.1	0.8914
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10003697 [exp]	8.5	0.9573
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10026811 [exp]	9.9	0.9633
					Lus10038080 [exp]	10.4	0.9460

Compare expression of checked genes

Lus10023568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.