Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34430 594 / 0 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT1G21700 208 / 1e-55 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G33610 133 / 1e-32 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT2G47620 108 / 4e-24 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT3G07740 76 / 7e-14 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4) AT4G16420 75 / 1e-13 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) AT1G18330 44 / 0.0003 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT2G46830 45 / 0.0004 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT3G10113 44 / 0.0004 MYB Homeodomain-like superfamily protein (.1) AT5G17300 43 / 0.0009 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040472 [exp] 1664 / 0 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 903 / 0 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 871 / 0 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 169 / 2e-43 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 169 / 4e-43 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10016043 [exp] 152 / 8e-39 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10025165 [exp] 145 / 1e-35 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10043188 [exp] 139 / 6e-34 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1) Lus10032555 [exp] 137 / 1e-33 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G114900 [exp] 800 / 0 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 767 / 0 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G080600 [exp] 192 / 2e-50 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 182 / 4e-47 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.015G100400 [exp] 141 / 6e-35 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G004800 [exp] 86 / 4e-17 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.016G007600 [exp] 84 / 2e-16 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.006G017300 [exp] 84 / 2e-16 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 79 / 8e-15 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.015G030400 [exp] 48 / 4e-05 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0006 [flax] [poplar] C1 PF00569 [flax] [poplar] ZZ Zinc finger, ZZ type CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023583 pacid=23160546 polypeptide=Lus10023583 locus=Lus10023583.g ID=Lus10023583.BGIv1.0 annot-version=v1.0 ATGGACGACAGATCTCCGGCGGGAGCCGATTCACCGGCGTCGGCGGAGCCTTCAAGGCGGCGAGGTGGGCTGAAGAGGAAGGCAAATTCGCTCTCGGGTT CTTCTTTCTTCTCCTCTTCCGCACCTTCGAAACGGATGACGACACGAGAGAAATCAGCTATGATGTCGTCGTTCTCCAACTCTCCATTTCACAACGGCCC GTTGACAAGAGCCGCCAGGCATGGCCCCAGCAATTTCCCTTCTTCTTCTTCGACGGCGGCTGCAACAACTTCGGTGAAGCTCGAGGATAAGGCGAGAGCT GGATTAGCTGCGATTGCGACAGCTGCTGAGGTGGAGGAGAAGAAGAGATTGGAGGAGTTGGAGAAGAAGATAGAGGCAGAGTTTGAATGTGTTAGATCGA GGGAAGCTAACGCTCATGTGGTGCCTAATCACTGCGGGTGGTTTTCATGGACTAAAGTTCATCCTCTTGAGGAGCATTCGTTGCATTCATTCTTCAGTGG GAAGTCCCCTAATCGGACGCCTGCAACATACATGGAGATACGTAATTGGATTGTAAAGAAGTTTCATGCAAACCCAAATGAACAGATTGAGTTGAAAGAT TTATCAGATTTGGAAGTTGCAGACTTGGAAGCGAGGCAGGAGGTGCTAGAGTTCTTGGACTACTGGGGATTGATTAATTTCCACCCATTCCCAGAAAAAG ATTCTTCTGAAAATTCCAAGGGCGATGAAGCAACAAAGGACTCATTGCTGGAGAAGTTATTCCGCTTTGGACCTGTTTCATCATGTGCAGGAGTTGTTCC CAAGCCTAGCGTTGTTACTGCATCTCTACCACCTGGAATTTTTCCAGATTCTGCTGCAATTAGGGAAGAGTTGTTACAGCCAGAGGGACCTGCAGTCGAG TACCATTGTAATTCTTGTTCAGCTGATTGCTCTCGCAAGCGCTACCACTGTCCGAAGCAGGCAGATTATGATTTATGTGCGGATTGCTTTAGTAATGGGA AGTTTGATACGGACATGTCGTCCTCAGATTTTATTCTTATGGAGCCTGGGGAGGTTCGCGGTCTTAGTGGAGAAAAGTGGACAGATCAAGAGACCCTACT TCTCTTAGAGGCAATTGAAATTTATAAAGAAAACTGGAGTGAGATTGCGGAACATGTTGCCACAAAAACAAAGGCTCAGTGTATCTTACACTTTGTACAA ATGCCAATCGAGGATTCCTTTTTTGAATGTGATGATATGGTGGAAAATCTAAAGGAACCAGCTGATAAAAGTGCAACCAATGATAATGCTCTTGAAACAA GTGATGCTAAAGCTGATCTCAAGGAGGACCATCGTCAGACTTCTCCAATCGAGACTTCAAACCCAGACCAAACCGGTGAAGAGAGAGACGCTTCTGAGAA TGATGGTGAAGGAAAGCAAATTGATCATGAATCAAAACCAAATGCTGATGAAGCAAAAGTTACTTCAGAACCTTCAAAGCAAGATGCCGGTGAAGGAAAG ACTTGCGAAGAGTCTGGTGAACGGAAGGCTTGTGAAGAGTCTGGTGAAGGAAAGGCTTGTGAAGATTCAGGTGAAGGAAAGGCTTCGGAAGAGTCCGGTG AAGATGTTGCACTAAGAGCTCTAACAGAAGCATTGGAGGCTAATGGTTACGTTTTTAGTCCTGGCTTATCATTTGCTGAAGTTGGAAACCCTGCCATAGC TTTGGCAACTTTTTTTGTCAGATTGGTTGGTGGGGATGTCGCCTCTGCTTCAGCTCACAGTTCGCTAAAATCATTATCAAGCAGCTCCCCAGGTGTGCAA CTTGCAGCGCGACATTGCTTTCTCTTGGAACATCCACCAGATAACGGAAAGGAACAAGAAAGTAGTGATCGGGGTGTGACTGCGAAGACTGAAGAGAATT CTCCTAGAGACAGCCAAGAGGAGATGAATCAGTCGGGTAATAATCCAAGTTCAGGTTCAGATGCGTTGGCTTCGGTGGATATCCCAGATAAAGATGGAAG CAAATCTTCTACTGAAGAAAACAAACCAAAGGTTCTTTCAGATGACGATTCCAAGGGAAAGAGTACAGATGAATTAGGTCCCGGTGTAAGTCATGAGGGA GGTGTAACAAACGTGTCTAAGGTACTAACCGATTCGGACCGATCACTCAATGCCACGGAGGAGTCGAGTAAACCAGAATCCAAGTCAGAACCCTTGACAG AGTCTGTAAAGGAGCAGGAAAAGGGATCTTCTGCTGAATGCTCCGACATCAAAATATCAGAGAAAAACAACGACCCGTCTCCATCAACGGCTGGTGAAGA GCCAACTCAAGCTGCTGAGGTGTCGAAAGATGTAGAAACTGTCTCAGATGCTCCTCCCGTGGATATGAATGAGACAGAGGAACAACCCAAACTTATTTCG ACTGCAGATTGTGTTGAACCGGTAGTGATCCCGAAGGATATTTTAAAGGACAGTCACCAACCAGCGTCACCAAGTGCTTTGATTGATAATGGAGCAACTA CAGAGGTAGACCAAAAGGACAGTACATTGGAGAAGTCTAATAATAAAGAGACTAAAGATGGCAGCAAGATCGATAAGCTAAAGCGAACTGGAGTGGCTGT ACTTTCGGCAGCTGCAGTGAAGGCAAAACTTCTCGCAAATCAAGAAGAGGACCAAATCCGCCAACTAACTGCTGCTATGATCGAAAAACAGCTAAATAAA CTTGAAATGAAGATGGCTTTCTTCAACGATATGGACACTGTGATTCTGAGGGTTAAAGAACAACTTGACAGGTCCAGACAAAGACTTTACCAAGAACGAG CACAAATAATTGCAGCTCGCCTCGGGTTTCAAGCTTCGTCGTCTAAACCTGTCCAACCCTCCGCTCTAGCTGCCAACAGAATTGCAATGAACTTCTCAAA TGCATTCCCAAGGCCGCCCATGAGCTTGACATCCCAAATGCCACCGATTCCTAGGCCGTTGGCTCCTGTGGGGACTAACGTGTCGGAGCCTTTGAACCCT GCCGTGGCAGGAAATTCAACTAGGCCCTCCAGTCAGGATCCTGCATCTTCAGTTGAGACTAAGTAG
AA sequence Show only first row Show all	>Lus10023583 pacid=23160546 polypeptide=Lus10023583 locus=Lus10023583.g ID=Lus10023583.BGIv1.0 annot-version=v1.0 MDDRSPAGADSPASAEPSRRRGGLKRKANSLSGSSFFSSSAPSKRMTTREKSAMMSSFSNSPFHNGPLTRAARHGPSNFPSSSSTAAATTSVKLEDKARA GLAAIATAAEVEEKKRLEELEKKIEAEFECVRSREANAHVVPNHCGWFSWTKVHPLEEHSLHSFFSGKSPNRTPATYMEIRNWIVKKFHANPNEQIELKD LSDLEVADLEARQEVLEFLDYWGLINFHPFPEKDSSENSKGDEATKDSLLEKLFRFGPVSSCAGVVPKPSVVTASLPPGIFPDSAAIREELLQPEGPAVE YHCNSCSADCSRKRYHCPKQADYDLCADCFSNGKFDTDMSSSDFILMEPGEVRGLSGEKWTDQETLLLLEAIEIYKENWSEIAEHVATKTKAQCILHFVQ MPIEDSFFECDDMVENLKEPADKSATNDNALETSDAKADLKEDHRQTSPIETSNPDQTGEERDASENDGEGKQIDHESKPNADEAKVTSEPSKQDAGEGK TCEESGERKACEESGEGKACEDSGEGKASEESGEDVALRALTEALEANGYVFSPGLSFAEVGNPAIALATFFVRLVGGDVASASAHSSLKSLSSSSPGVQ LAARHCFLLEHPPDNGKEQESSDRGVTAKTEENSPRDSQEEMNQSGNNPSSGSDALASVDIPDKDGSKSSTEENKPKVLSDDDSKGKSTDELGPGVSHEG GVTNVSKVLTDSDRSLNATEESSKPESKSEPLTESVKEQEKGSSAECSDIKISEKNNDPSPSTAGEEPTQAAEVSKDVETVSDAPPVDMNETEEQPKLIS TADCVEPVVIPKDILKDSHQPASPSALIDNGATTEVDQKDSTLEKSNNKETKDGSKIDKLKRTGVAVLSAAAVKAKLLANQEEDQIRQLTAAMIEKQLNK LEMKMAFFNDMDTVILRVKEQLDRSRQRLYQERAQIIAARLGFQASSSKPVQPSALAANRIAMNFSNAFPRPPMSLTSQMPPIPRPLAPVGTNVSEPLNP AVAGNSTRPSSQDPASSVETK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	0	1
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	3.2	0.9416
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	4.5	0.9226
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10015341 [exp]	6.5	0.9099
AT2G47330			P-loop containing nucleoside t...		Lus10037527 [exp]	8.4	0.9125
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	9.5	0.9174
AT5G11530		EMF1	embryonic flower 1 (EMF1) (.1)		Lus10011692 [exp]	9.5	0.9141
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10013852 [exp]	9.9	0.8858
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	10.4	0.9060
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10023504 [exp]	10.5	0.9203
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	10.6	0.9149

Compare expression of checked genes

Lus10023583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.