Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 174 / 8e-48 GRAS RGL2 RGA-like 2 (.1) AT5G17490 166 / 8e-45 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 165 / 9e-45 GRAS RGL1 RGA-like 1 (.1) AT2G01570 155 / 8e-41 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 152 / 4e-40 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT4G17230 137 / 7e-35 GRAS SCL13 SCARECROW-like 13 (.1) AT1G55580 129 / 3e-32 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G48150 127 / 2e-31 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G50650 127 / 3e-31 GRAS SCL7 GRAS family transcription factor (.1) AT1G50600 127 / 7e-31 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024252 [exp] 992 / 0 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10016889 [exp] 456 / 4e-156 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10037754 [exp] 378 / 2e-128 AT1G66350 156 / 2e-43 RGA-like 1 (.1) Lus10037753 [exp] 319 / 5e-103 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10037758 [exp] 304 / 2e-96 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10041128 [exp] 301 / 4e-96 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10036459 [exp] 302 / 6e-96 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10016897 [exp] 296 / 1e-93 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 288 / 6e-90 AT3G03450 175 / 1e-47 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 358 / 2e-117 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 340 / 3e-110 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 322 / 2e-103 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 286 / 1e-90 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 266 / 4e-82 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 246 / 1e-75 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 233 / 1e-69 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.004G089800 [exp] 164 / 1e-43 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 159 / 5e-42 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 157 / 3e-41 AT1G66350 296 / 2e-92 RGA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10023621 pacid=23148315 polypeptide=Lus10023621 locus=Lus10023621.g ID=Lus10023621.BGIv1.0 annot-version=v1.0 ATGGATCAATTCTCCAAGTCAACACGTGATTTCAACCACGTTGACGATGATCAATGGCTCCAATTACAATTCTCGCCGTCCTTGCCCATTTTGGATCATC ACGAAATCGACGGATATTATTCATGTCAGCGCCGCTCTAATTTTGACCTGCTTCACAAATACGGCTTCCAGCCTGTCACCGACTCCGCCCCTCCTCCTCC TCAAGCAGCCCCTCTTATTGAACAACTAGAAGAAGAAGAGATGAATGAAGTGCCGTTGTCGGCGGAGGAAGTCGTCAGAATCGCCGGGATGAGAATCGTA CAGCACTCGTCTAGGAAAGCCGGCTCTCCATCGATGCTCCAGATTCCATTCGATCCTTCCCTCTCGTACCTTTCCCACCAGGACTTGAAGAACGTGGAGC TCGCCGAGTACCTCCTAGCCGCCGCGGAGAGAGTCGGCGACAAGCAGTTTCACCACGCCGCCGCCTTGCTCAACCTCTGCGACGCCATGTCTTCCAAAAC CGGAAACCCCGTTCAACGATTGGGCCACTGCTTCTCCCGAGCACTACGCGACAGGATATCTCGCGATATGGGCCGAGGAGAAGTTGTTGATAATAAGCCC AACTCGCCACCTGACCCGCATGACTCAATGCTCACTACTACCGAGTTCGCCATCCAAGGAATGGAGCGCGGCGAAATGCCAATGTTCCAGGTCCCACATT TGGTCGGGGTTCAAGCCATATTAGAAAACGTGGCAACTTCCAACAGGATCCACGTCATCGATCTCAGGATCAGGAACGGTCAACATTGGGTTGCATTGAT CCAAGGCCTAGTATCTCGCCGGTCCGACCCAACCAATCCCCAACCGGTCGAGCTACTTCGAATCACCGCGGTCGAGACATCTACCGATGAATGTTCATCT TCAATTCAGGAGACCGGGAGCCGGCTTTCGGACTTTGCTAAAGCCATGAGTATACCATTCCGGTTCGAGATTGTTGTTATGGAAGACAACCGGTGGGCTG GTTTCAAACCTGACCGGTTCGGGTTGAACACGAACGAAGAGTCGCTAGTGGTGTATTCGGAATGGGGTTTGAGGAGATTACTCACGCGGCCACGAGAGGC GGACAGAGTGATGAAGACGTTGAAACAAATGAAGCCACGGGTGATGATCACCGTGGAGGTGGAAGCGAACCTCAACTCCCCGAATTTTTCGGGGAGGTTC GTGGAGGCGTTGTTCCACTATAGCGCGGTGTTTGAGAACGTAGAGTGCTGCAACCCGAATCGAGATTGTCCCAACAGGGAGACGATCGAGACGGTGTACT TGGGGGACCAGATAAGTAACATATTGGCAACGGAAGGGGATGAGAGGTACTTGAGGAGCGTGAAGATTGAAGTATGGAGGAAGTTCTTCAAGCAGTTTGG GATGGAGGAGCTAGAGCCGAGTGAGGCGGCTATGCATCAGGCTAAGTTATTCATGGAGAAGTATGTGAGCGAGCAGCATTACACAATTGGTATGGATGGG AAAAGCATGGTTTTGGGGTTTAAAACTACGCCTATGATTTGTGTGTCTACTTGGAAGTTTGTTCAATTGGCCAGGCTGGCTAGTACTAAGCGGGATTTGA GGGTTGAGTTCTACTGA
AA sequence Show only first row Show all	>Lus10023621 pacid=23148315 polypeptide=Lus10023621 locus=Lus10023621.g ID=Lus10023621.BGIv1.0 annot-version=v1.0 MDQFSKSTRDFNHVDDDQWLQLQFSPSLPILDHHEIDGYYSCQRRSNFDLLHKYGFQPVTDSAPPPPQAAPLIEQLEEEEMNEVPLSAEEVVRIAGMRIV QHSSRKAGSPSMLQIPFDPSLSYLSHQDLKNVELAEYLLAAAERVGDKQFHHAAALLNLCDAMSSKTGNPVQRLGHCFSRALRDRISRDMGRGEVVDNKP NSPPDPHDSMLTTTEFAIQGMERGEMPMFQVPHLVGVQAILENVATSNRIHVIDLRIRNGQHWVALIQGLVSRRSDPTNPQPVELLRITAVETSTDECSS SIQETGSRLSDFAKAMSIPFRFEIVVMEDNRWAGFKPDRFGLNTNEESLVVYSEWGLRRLLTRPREADRVMKTLKQMKPRVMITVEVEANLNSPNFSGRF VEALFHYSAVFENVECCNPNRDCPNRETIETVYLGDQISNILATEGDERYLRSVKIEVWRKFFKQFGMEELEPSEAAMHQAKLFMEKYVSEQHYTIGMDG KSMVLGFKTTPMICVSTWKFVQLARLASTKRDLRVEFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10023621 [exp]	0	1
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10032582 [exp]	9.2	0.7217
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10017930 [exp]	11.3	0.7374
AT2G43570		CHI	"chitinase, putative", chitina...		Lus10014253 [exp]	44.4	0.6300
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10020122 [exp]	49.6	0.7060
AT5G19485			transferases;nucleotidyltransf...		Lus10036081 [exp]	74.5	0.6584
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026926 [exp]	75.5	0.6744
AT4G15910		ATDI21	drought-induced 21 (.1)		Lus10037497 [exp]	111.0	0.6313
					Lus10011637 [exp]	125.9	0.6309
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	132.6	0.6224
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	155.5	0.6156

Compare expression of checked genes

Lus10023621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.