Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13250 716 / 0 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G04900 211 / 7e-64 NOL NYC1-like (.1) AT4G13180 79 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 77 / 1e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 75 / 9e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 73 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G04000 71 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 71 / 4e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 69 / 6e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 69 / 7e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034917 [exp] 642 / 0 AT4G13250 543 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10033408 [exp] 214 / 5e-65 AT5G04900 478 / 1e-170 NYC1-like (.1) Lus10034874 [exp] 207 / 5e-63 AT5G04900 466 / 7e-167 NYC1-like (.1) Lus10040733 [exp] 87 / 7e-19 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 83 / 1e-17 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 83 / 1e-17 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 83 / 2e-17 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 81 / 1e-16 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026260 [exp] 79 / 3e-16 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081200 [exp] 752 / 0 AT4G13250 696 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G014200 [exp] 214 / 1e-64 AT5G04900 511 / 0.0 NYC1-like (.1) Potri.019G033500 [exp] 81 / 9e-17 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 77 / 1e-15 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G059000 [exp] 76 / 2e-15 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 75 / 6e-15 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 75 / 1e-14 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 74 / 1e-14 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 74 / 2e-14 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G206800 [exp] 74 / 2e-14 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023644 pacid=23148359 polypeptide=Lus10023644 locus=Lus10023644.g ID=Lus10023644.BGIv1.0 annot-version=v1.0 ATGGCTACTGTTGCAATTGCAAAGTTTCAAGTCTACCCTGCTGATATTTCCACTTGTGGCGGACGGCGGAGGATAGCAAGCAGTGGGTTCTTCTTGAGGG CACCACCGGTAGGGTTTTTTAAGGGAAGTTGCGGACTGTCCTCCTCTCAGCAGTGTAGGGCTTTCAGGTCTGAAGATGGTGAATGTAAAGGAGAAGATGT AGAAAAGGAAAGGAAAGCTGAGTTAATGAAGAAAAATGAAGATGGGTTATGGGCACCTGGAATTGGTAGGTTGAAATTGCTATCCAAGGAGGAGTACACT AGGGGAGTTGCTAAAGTGGAGGAACTCTTCTCTTCGGTGGCCATCCACATTGGAAGATACATTGTGACCATGATGAGCACTGGAGTTGTACTTGCTACTG GTTTTCAGTTGTCAGGTGGAGATGGTCAGATGAATGATCTTATCTGGTATAGCTGGCTTGGAGGAATCATAATAGGCACAATGATAGGTGCTAACATGGT TTTGGATGAACATTGTCGAGCCGGCCCTCGTAATGTTGTCATAACTGGAAGCACGCGAGGATTGGGAAAAGCACTTGCCAGGGAATTTCTTCTTTCCGGG GATCATGTGGTAGTTGCATCACGCAGCCAGGAGTCTGTGGATATGACGTTGAAGGAGCTCGAGGAGAACATCAAAGAAGGAATGGCATCCGCAGAAGGCT CGTCCAAGCAACATCTGGGTCATGCAAGAGTAGTTGGTATAGCTTGTGATGTTTGTGATCCGTCTGATGTGAAGAAACTCGCTGATTTCGCGGTCAAGGA ATTCGGGTCGATTAACTTATGGATAAACAATGCTGGGACAAATAAAGGTTTCAGACCTTTGCTGCAGTTCAGTGATGAAGACATAACTCAGATTGTGTCG ACGAATTTGGTCGGATCAATTCTCTGCACCCGAGAAGCTATGCGAGTGATGGAAAACCAACCTAAGGGGGGTCACATTTTCAATATGGATGGTGCAGGCT CTGGTGGCTCAAGTACTCCTCTTACAGCAGTCTACGGAGCAACAAAGTGTGGTCTTAGACAGCTTCAAACTTCACTTCTGAAGGAGAGTAAGAAGTCTAA GGTTGGAGTACATACAGCATCACCAGGCATGGTCCTTACAGAATTGCTTTTGAGTGGATCGACGCTTAAAAACAAGCAGATGTTTAACATAATCTGCGAG CTCCCGGAGACTGTTGCGAGGACCTTAGTTCCGCGAATGAGGGTCGTGAAAGGCTCAGGGAAGGCAATCAATTACTTAACTCCTCCAAGAATCTTACTTG CTTTAGTCACAGCTTGGTTGCGTCGTGGTCGGTGGTTCGATGACCAGGGAAGAGCATTGTATGCTGCGGAGGCAGACCGGCTACGAAACTGGGCTGAGAA TCGAGCTCGGTTTTCGTTCACGGATGCAATGGAGATGTACACCGAGAACACATGGGTATCCGTATTTTCGCTCTCGGTCGTATGTGCCTTCATAATCCTA TCTAGCACCGCCAGTGGCGCATCTCCTGGCACCTAA
AA sequence Show only first row Show all	>Lus10023644 pacid=23148359 polypeptide=Lus10023644 locus=Lus10023644.g ID=Lus10023644.BGIv1.0 annot-version=v1.0 MATVAIAKFQVYPADISTCGGRRRIASSGFFLRAPPVGFFKGSCGLSSSQQCRAFRSEDGECKGEDVEKERKAELMKKNEDGLWAPGIGRLKLLSKEEYT RGVAKVEELFSSVAIHIGRYIVTMMSTGVVLATGFQLSGGDGQMNDLIWYSWLGGIIIGTMIGANMVLDEHCRAGPRNVVITGSTRGLGKALAREFLLSG DHVVVASRSQESVDMTLKELEENIKEGMASAEGSSKQHLGHARVVGIACDVCDPSDVKKLADFAVKEFGSINLWINNAGTNKGFRPLLQFSDEDITQIVS TNLVGSILCTREAMRVMENQPKGGHIFNMDGAGSGGSSTPLTAVYGATKCGLRQLQTSLLKESKKSKVGVHTASPGMVLTELLLSGSTLKNKQMFNIICE LPETVARTLVPRMRVVKGSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIIL SSTASGASPGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	0	1
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	2.4	0.8967
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	3.2	0.8863
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	6.2	0.8613
AT5G57710			Double Clp-N motif-containing ...		Lus10019984 [exp]	8.9	0.8217
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10010605 [exp]	10.4	0.8177
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	14.0	0.8525
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10040683 [exp]	14.4	0.8134
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10037996 [exp]	14.5	0.8345
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Lus10001200 [exp]	14.7	0.8257
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	14.8	0.8204

Compare expression of checked genes

Lus10023644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.