Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24310 211 / 3e-67 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT4G13480 201 / 1e-63 MYB ATMYB79 myb domain protein 79 (.1) AT3G30210 179 / 1e-54 MYB ATMYB121 myb domain protein 121 (.1) AT3G27810 166 / 2e-50 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 165 / 4e-50 MYB ATMYB24 myb domain protein 24 (.1) AT1G48000 166 / 6e-50 MYB ATMYB112 myb domain protein 112 (.1) AT1G68320 164 / 1e-48 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT5G59780 162 / 2e-48 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT3G46130 162 / 3e-48 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT1G25340 160 / 3e-47 MYB ATMYB116 myb domain protein 116 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014453 [exp] 374 / 8e-131 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10034372 [exp] 174 / 2e-53 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10005079 [exp] 173 / 7e-53 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Lus10022259 [exp] 165 / 1e-49 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10038062 [exp] 164 / 6e-49 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10005886 [exp] 160 / 6e-48 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10041435 [exp] 163 / 9e-48 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10032129 [exp] 159 / 1e-47 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10034338 [exp] 161 / 3e-47 AT1G68320 262 / 2e-86 myb domain protein 62 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G173400 [exp] 224 / 3e-72 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.010G064000 [exp] 202 / 5e-64 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.004G118000 [exp] 181 / 3e-56 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.004G115600 [exp] 179 / 2e-55 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.017G099500 [exp] 177 / 2e-54 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Potri.010G149900 [exp] 168 / 6e-50 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.017G071500 [exp] 163 / 1e-49 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G101400 [exp] 166 / 4e-49 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.008G122100 [exp] 165 / 7e-49 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.009G027300 [exp] 162 / 1e-48 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023711 pacid=23148318 polypeptide=Lus10023711 locus=Lus10023711.g ID=Lus10023711.BGIv1.0 annot-version=v1.0 ATGTCTTGGGGAGTGATGTCGGGAGATTTGGGGTGGGGATCGAGTGTGGTTGTTGAAGAAGTTGGCTGGCGGAAGGGTCCCTGGACTGCTGAAGAGGACA AGTTGCTTATCGACTATGTCAAGTTGCATGGCGAAGGCCGCTGGAACTCTGTTTCTAGGCTTGCTGGACTGAAGAGGAATGGGAAGAGTTGCAGATTGAG GTGGGTTAACTACTTGAGGCCTGACCTCAAGAGAGGCCAAATCACTCCCCAGGAAGAGACCATTATCCTTGAGTTGCATGCCAGATGGGGCAACAGGTGG TCCACGATTGCGAGGAGCTTGCCAGGGAGAACAGACAACGAGATAAAGAATTACTGGAGAACCCATTTCAAAAAAAAGACCAAACCTTCCCCTAGTGCGG CAGCAGCCGACACCTCAGACAAGGCCAGAAATCGTCTTCTCAAAAGGCAGCACTTCCATCAACAGCAGAAGGAACAGCAGCAGATAATGCAAGCACAACA GCAGTATCAGCATCAACATCAACATCAGCAGCTCCTGTGGCAACTCAACCAACTCGACATCAAAAAGATCATGTCTCTACTCCTCGACGACAATGAATAT TCCTCCAATAATAATAATAATCAAAATATGGCTCAGTTCAGCGGCAGGCGAGAAGTCGATCCTACCCCCGCTGCCACGACAAATACCGAGAATAGTATTT ATCCGAGCCAAGAGCAGCATGGAGGGTACTATGCCAACGGTATTTACCCGTATTCGCCGCCGTTTCTAATGGCTCCGGCGGAGGCGAACCAAGAGATATT AAGCACCCCGTGGATCGACGGGCTGTGGAGCTTGGAGGATCTGCATGCTGCTGGAAGAGCAACTACTACTACTACTACCAGCAGCATCTCAAATTTAGTT GCACCCTTTTGCTGA
AA sequence Show only first row Show all	>Lus10023711 pacid=23148318 polypeptide=Lus10023711 locus=Lus10023711.g ID=Lus10023711.BGIv1.0 annot-version=v1.0 MSWGVMSGDLGWGSSVVVEEVGWRKGPWTAEEDKLLIDYVKLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEETIILELHARWGNRW STIARSLPGRTDNEIKNYWRTHFKKKTKPSPSAAAADTSDKARNRLLKRQHFHQQQKEQQQIMQAQQQYQHQHQHQQLLWQLNQLDIKKIMSLLLDDNEY SSNNNNNQNMAQFSGRREVDPTPAATTNTENSIYPSQEQHGGYYANGIYPYSPPFLMAPAEANQEILSTPWIDGLWSLEDLHAAGRATTTTTTSSISNLV APFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10023711 [exp]	0	1
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10004178 [exp]	2.2	0.7892
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	11.6	0.8223
AT2G35730			Heavy metal transport/detoxifi...		Lus10000263 [exp]	32.2	0.7319
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	33.1	0.7875
AT3G54720		MFO1, HPT, COP2...	PRIMORDIA TIMING, Multifolia, ...		Lus10021090 [exp]	35.5	0.7854
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	48.0	0.7623
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	64.0	0.7695
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	82.9	0.7450
AT2G31085		AtCLE6, CLE6	CLAVATA3/ESR-RELATED 6 (.1)		Lus10000464 [exp]	86.9	0.6737
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029183 [exp]	87.7	0.7064

Compare expression of checked genes

Lus10023711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.