Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37540 428 / 1e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 424 / 7e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 330 / 4e-113 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 330 / 6e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 328 / 3e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G24050 290 / 8e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 283 / 5e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 261 / 1e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G54190 108 / 2e-26 PORA protochlorophyllide oxidoreductase A (.1.2) AT1G03630 105 / 2e-25 PORC ,POR C protochlorophyllide oxidoreductase C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024415 [exp] 527 / 0 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10025321 [exp] 461 / 8e-165 AT5G02540 412 / 1e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 357 / 1e-123 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 356 / 4e-123 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 354 / 2e-122 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032282 [exp] 348 / 6e-120 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10014975 [exp] 348 / 1e-119 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024649 [exp] 346 / 4e-119 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 345 / 6e-119 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083900 [exp] 493 / 5e-177 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128700 [exp] 353 / 5e-122 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 346 / 3e-119 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 332 / 1e-113 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143600 [exp] 320 / 1e-108 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 310 / 4e-105 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 305 / 6e-103 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G087800 [exp] 296 / 2e-99 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 291 / 3e-97 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 291 / 3e-97 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10023762 pacid=23151438 polypeptide=Lus10023762 locus=Lus10023762.g ID=Lus10023762.BGIv1.0 annot-version=v1.0 ATGATGATGAACTTAATCTCGTTGGTGACAGGAATGGCCGGCCCAACTGGGTTCGGTTCTGCTTCCACCGCCGACCAAGTCTGTCAAGGGATTGACGCTT CTCATCTCACCGTCATTCTCACCGGTGGCTCTAGCGGGATCGGATTCGAGACCGCCAGAGTTCTCGCCCAACATAATGCCCACCTCATCATTGCTGCCAG AGACATCACTGCTGCTAACCAAGCCAGGCGTCTTATTCTCGACGACTTCCAACACGCCTGCGTTGATGTCCTCGAACTCGACTTGGCTTCCCTCAGTTCC GTCCGTCGCTTCGCTAACAGCTTCATATCCCTCAATCTCCCCCTCAACGTCTTGATAAACAATGCTGGAGTAATGTTCTGCCCATACCAGTTGTCTCAAG ATGGGATCGAGATGCAGTTCGCTACTAATCATCTCGGTCATTTTCTGCTGACCAATCTTCTGATGGAGAAGATGAAAGAGACGGCAAAAGGGACAGGTGT ACAAGGCAGGATCGTCAATCTATCTTCCATTGCTCACATCCACACCTACAAACACGGCATTCTTTTCCAAGACATCAATGACAAATCACTGTATTCAGAC AAAAGAGCGTACGGGCAATCAAAACTAGCCAACATTCTGCACGTCAAGGAGCTCTCTCGTCGACTTGAGGATGAAGGAGTCAACATTACGGCCAACGCTG TTCATCCAGGACTCATCATGACTCCTTTATTCAGATACTCTGCTATTTCCATGAGGATTTTGAAGCTGTTTTCGAATTTCCTGTGGAAGAACGTGGCTCA GGGAGCGGCGACGAGCTGCTACGTAGCGGCTCATCCAGCGATGGAAGGGGTGAGTGGGAAGTACTTGGCGGACTGCAACCAAGTGGAACCAAGTTCCTTT GCTAGTGACCAAATCTTGGCCGCTAGGCTATGGGATTTAAGCAACGACCTCATCAACTCTGTTTCTTCCAAGCCATGA
AA sequence Show only first row Show all	>Lus10023762 pacid=23151438 polypeptide=Lus10023762 locus=Lus10023762.g ID=Lus10023762.BGIv1.0 annot-version=v1.0 MMMNLISLVTGMAGPTGFGSASTADQVCQGIDASHLTVILTGGSSGIGFETARVLAQHNAHLIIAARDITAANQARRLILDDFQHACVDVLELDLASLSS VRRFANSFISLNLPLNVLINNAGVMFCPYQLSQDGIEMQFATNHLGHFLLTNLLMEKMKETAKGTGVQGRIVNLSSIAHIHTYKHGILFQDINDKSLYSD KRAYGQSKLANILHVKELSRRLEDEGVNITANAVHPGLIMTPLFRYSAISMRILKLFSNFLWKNVAQGAATSCYVAAHPAMEGVSGKYLADCNQVEPSSF ASDQILAARLWDLSNDLINSVSSKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	0	1
AT2G20835			unknown protein		Lus10018561 [exp]	3.0	0.9331
					Lus10010397 [exp]	3.3	0.9565
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	4.9	0.9525
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	6.3	0.9427
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	6.9	0.9516
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10013055 [exp]	6.9	0.9499
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	9.9	0.9392
					Lus10020194 [exp]	10.4	0.9422
AT3G09280			unknown protein		Lus10018504 [exp]	10.6	0.9251
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10031520 [exp]	14.4	0.9273

Compare expression of checked genes

Lus10023762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.