Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06800 214 / 4e-66 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 154 / 2e-44 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 156 / 6e-44 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G29000 153 / 6e-43 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04450 150 / 2e-41 GARP Homeodomain-like superfamily protein (.1.2) AT2G20400 137 / 8e-37 GARP myb-like HTH transcriptional regulator family protein (.1) AT3G13040 134 / 2e-35 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G18240 125 / 3e-32 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 122 / 2e-31 GARP Homeodomain-like superfamily protein (.1.2.3) AT1G69580 119 / 1e-30 GARP Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021035 [exp] 400 / 2e-135 AT3G15010 182 / 4e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10024938 [exp] 169 / 3e-48 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 169 / 4e-48 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10032778 [exp] 159 / 7e-45 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10022885 [exp] 159 / 1e-44 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10008197 [exp] 155 / 5e-43 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 155 / 7e-43 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10039124 [exp] 149 / 3e-42 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10038734 [exp] 139 / 1e-38 AT2G01060 324 / 1e-111 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G191000 [exp] 229 / 1e-71 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 219 / 3e-68 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.002G257800 [exp] 160 / 1e-44 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.019G020900 [exp] 157 / 4e-44 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G000800 [exp] 153 / 2e-43 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G228500 [exp] 153 / 8e-43 AT5G06800 179 / 3e-52 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 149 / 3e-42 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.013G048000 [exp] 151 / 1e-41 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.016G048000 [exp] 145 / 1e-40 AT5G06800 168 / 4e-49 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G101000 [exp] 136 / 1e-37 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023816 pacid=23160809 polypeptide=Lus10023816 locus=Lus10023816.g ID=Lus10023816.BGIv1.0 annot-version=v1.0 ATGGTGGGGAAAATGACTTCTCCAAATGTTGATTTCCACGACGGACTGCTGATCAACAGTAACAATAACCAGTTATTCATGGGGCAGCAGCAGGAAGCTT GGAGCAACATGGGGACCGCGATCCGGCTCGAATCAGCTAAGCCTTCGAGCAGCTGTATAGTGAGCAGGTTCGACTCGCCAGCTTCGGCTTTCTACGCGAC GGAGAGGTACATGGGTCTTCAGCAGTATGATCATCACATGTCCGGATCGCATCAGGATTCATCACTGCAGCTACAGCAACTGATGAAACAGAGTAGTAAT TATTCAGTTTATCACCGGCGTAATCAGTTGGAGCACCTTGATTTCAAGCCCTTTCAGCTAAACCTGCAGGATCAGAAAATGCAGGTTGGGGTACCGATTT CACAGGTGGGTTTCCAGTCAAGGCATGATCAGAATGATCTGTCCCCAGGTGGTGGTGGTTCGATGGGTTCGGGAGCCGGGCTATCGAATAAGACTAGGAT CAGATGGACACAGGATCTCCATGAAAAGTTTGTGGAGTGTGTCAATCGATTGGGAGGTGCAGACAAAGCAACTTCAAAGGCAATTCTGAAGCTGATGGAT TCTGAAGGACTCACCATCTTCCATGTCAAAAGCCATTTGCAGAAATACAGGATTGCAAAGTACATGCCAGACACATCTGAAGGAAAGACTGATAGAAGAA GTGTCATTAATGATGTATCACAGCTTGACCCGAAAGCTGGATTTCAAATCCGGGAGGCGCTTCAGCTACAACTAGACGTCCGTCTCCACGAACAGCTGAA GATACAGAGAAATTTGCAGGTAAGGATTGAAGAGCAAAGCAAGCAGCTGAAGATGATGTTTGATCACCAACAACAGAACAAGAATGGTAGTAGTAGTATT AGTAATAACAACAACAGCAGTAACAACAACCTCTGGGGAGCTTTCAATGTTACAACGACAACCACAACATCAAATTTCCAAGCGGGTCATCATCAGCCAG TTTTAAGTACACTGGAAGATGATGTTGATGAAGTCTCGATAGCTCCCGAAGAAGGGTCTGAAAATGTCAACTTCCCAACAAAAATAAGTTAG
AA sequence Show only first row Show all	>Lus10023816 pacid=23160809 polypeptide=Lus10023816 locus=Lus10023816.g ID=Lus10023816.BGIv1.0 annot-version=v1.0 MVGKMTSPNVDFHDGLLINSNNNQLFMGQQQEAWSNMGTAIRLESAKPSSSCIVSRFDSPASAFYATERYMGLQQYDHHMSGSHQDSSLQLQQLMKQSSN YSVYHRRNQLEHLDFKPFQLNLQDQKMQVGVPISQVGFQSRHDQNDLSPGGGGSMGSGAGLSNKTRIRWTQDLHEKFVECVNRLGGADKATSKAILKLMD SEGLTIFHVKSHLQKYRIAKYMPDTSEGKTDRRSVINDVSQLDPKAGFQIREALQLQLDVRLHEQLKIQRNLQVRIEEQSKQLKMMFDHQQQNKNGSSSI SNNNNSSNNNLWGAFNVTTTTTTSNFQAGHHQPVLSTLEDDVDEVSIAPEEGSENVNFPTKIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	0	1
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10021035 [exp]	1.0	0.9621
AT1G10380			Putative membrane lipoprotein ...		Lus10037237 [exp]	2.8	0.9126
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	4.5	0.9318
AT1G27990			unknown protein		Lus10015763 [exp]	5.3	0.9160
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10013012 [exp]	5.3	0.9244
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	6.0	0.9290
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10020556 [exp]	7.9	0.9124
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	9.2	0.9228
AT2G39440			unknown protein		Lus10040607 [exp]	9.5	0.9241
AT3G57810			Cysteine proteinases superfami...		Lus10037002 [exp]	10.5	0.8713

Compare expression of checked genes

Lus10023816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.