Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53200 174 / 4e-54 MYB ATMYB27 myb domain protein 27 (.1) AT3G46130 155 / 8e-47 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT3G24310 155 / 2e-46 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT5G59780 153 / 2e-46 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT4G13480 153 / 9e-46 MYB ATMYB79 myb domain protein 79 (.1) AT3G30210 147 / 2e-43 MYB ATMYB121 myb domain protein 121 (.1) AT2G47190 145 / 1e-42 MYB AtMYB2 myb domain protein 2 (.1) AT5G40350 143 / 2e-42 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 140 / 1e-41 MYB ATMYB57 myb domain protein 57 (.1) AT1G79180 142 / 2e-41 MYB ATMYB63 myb domain protein 63 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014415 [exp] 409 / 4e-147 AT3G53200 174 / 3e-54 myb domain protein 27 (.1) Lus10005886 [exp] 159 / 2e-48 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10023711 [exp] 155 / 5e-46 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 153 / 3e-45 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10005079 [exp] 149 / 1e-44 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Lus10038062 [exp] 145 / 1e-42 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10034372 [exp] 144 / 1e-42 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10013762 [exp] 144 / 3e-42 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10009996 [exp] 142 / 4e-41 AT2G47190 221 / 3e-71 myb domain protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122100 [exp] 196 / 4e-63 AT3G53200 181 / 6e-57 myb domain protein 27 (.1) Potri.001G235500 [exp] 157 / 7e-48 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4) Potri.009G027300 [exp] 157 / 9e-48 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.010G064000 [exp] 155 / 9e-47 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.008G173400 [exp] 152 / 2e-45 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.004G115600 [exp] 149 / 5e-45 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.004G118000 [exp] 149 / 8e-45 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.003G079100 [exp] 147 / 1e-44 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.017G071500 [exp] 141 / 5e-42 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.008G101400 [exp] 144 / 6e-42 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023918 pacid=23160730 polypeptide=Lus10023918 locus=Lus10023918.g ID=Lus10023918.BGIv1.0 annot-version=v1.0 ATGGCTATGGAACAACGACAGGGCGACAGTTTACGAAAAGGTCCCTGGCTCGAGGAGGAGGACGAACGATTAGGAAGTTTGGTGAATGTGTTTGGAGAGA AGAAATGGGACTCCATTGCAAGAATCTCCGGTTTAAGGAGGAGTGGGAAGAGCTGCAGAATGAGATGGCTCAACTATCTACGTCCGAACCTTAAACGCTT CCGTATTACTGCTGATGAGGAGCAAATCATCATCCAACTCCACCACCAATGGGGAAACAAGTGGTCGAGGATCGCTCGAAGCCTGCCAGGGAGGACGGAC AACGAGATCAAGAACTACTGGAGGACCCACCTGAGCAAGAAGATTGTTATACAAGATCAAGAAAAAGAAGGGGAATTTCATCATGACACTACTAATGTTA GTGACAATATGGCTCAGCAGGATTTGGTGGCTCTGGTTCAGGATGGATTTGTGGCGGAGTCGGGCGAGCAATACGATTCGTGGAAGTTGATGGATTCGAC GTACGAGTTAAGATTGTATGAACACTGGCTGTCTGAGATTAATAATTCAGGTGATCAGGAAGAATGTAAAGGGTGTGTCAATGGAGGCTTAGAAGAGTGT TTTGGTTGTTACAGTTGCATGGGATCATGCAACTATGAAGTATTTGAAAATAGTAGTGTGGTAGATTGTCTTTGGGAACATAGCTAA
AA sequence Show only first row Show all	>Lus10023918 pacid=23160730 polypeptide=Lus10023918 locus=Lus10023918.g ID=Lus10023918.BGIv1.0 annot-version=v1.0 MAMEQRQGDSLRKGPWLEEEDERLGSLVNVFGEKKWDSIARISGLRRSGKSCRMRWLNYLRPNLKRFRITADEEQIIIQLHHQWGNKWSRIARSLPGRTD NEIKNYWRTHLSKKIVIQDQEKEGEFHHDTTNVSDNMAQQDLVALVQDGFVAESGEQYDSWKLMDSTYELRLYEHWLSEINNSGDQEECKGCVNGGLEEC FGCYSCMGSCNYEVFENSSVVDCLWEHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10023918 [exp]	0	1
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	1.4	0.9434
					Lus10043397 [exp]	7.5	0.9375
AT5G58880			unknown protein		Lus10005869 [exp]	7.6	0.8981
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	8.1	0.8956
					Lus10037168 [exp]	11.2	0.8852
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	11.6	0.9366
AT1G49570			Peroxidase superfamily protein...		Lus10020994 [exp]	12.8	0.9079
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	13.6	0.8972
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	14.7	0.9359
					Lus10006284 [exp]	15.7	0.9292

Compare expression of checked genes

Lus10023918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.