Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63810 801 / 0 BGAL10 beta-galactosidase 10 (.1) AT1G41830 717 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G38420 711 / 0 SKS9 SKU5 similar 9 (.1) AT4G36360 708 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT1G21850 704 / 0 SKS8 SKU5 similar 8 (.1) AT1G76160 697 / 0 SKS5 SKU5 similar 5 (.1) AT1G21860 690 / 0 SKS7 SKU5 similar 7 (.1) AT3G13750 687 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT2G28470 677 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G22010 664 / 0 SKS4 SKU5 similar 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025108 [exp] 1392 / 0 AT5G63810 949 / 0.0 beta-galactosidase 10 (.1) Lus10022645 [exp] 1054 / 0 AT5G63810 1058 / 0.0 beta-galactosidase 10 (.1) Lus10003343 [exp] 1040 / 0 AT5G63810 1054 / 0.0 beta-galactosidase 10 (.1) Lus10025107 [exp] 1023 / 0 AT1G41830 645 / 0.0 SKU5 SIMILAR 6, SKU5-similar 6 (.1) Lus10023976 [exp] 967 / 0 AT5G63810 439 / 1e-147 beta-galactosidase 10 (.1) Lus10022648 [exp] 901 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10003346 [exp] 775 / 0 AT1G21860 627 / 0.0 SKU5 similar 7 (.1) Lus10041798 [exp] 700 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10005649 [exp] 692 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099800 [exp] 986 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.004G180500 [exp] 742 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 700 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.003G038500 [exp] 692 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.006G144500 [exp] 692 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 691 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 690 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.002G013700 [exp] 690 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.001G200400 [exp] 686 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.009G012400 [exp] 669 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF02837 [flax] [poplar] Glyco_hydro_2_N Glycosyl hydrolases family 2, sugar binding domain CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] PF02140 [flax] [poplar] Gal_Lectin Galactose binding lectin domain CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10023977 pacid=23160670 polypeptide=Lus10023977 locus=Lus10023977.g ID=Lus10023977.BGIv1.0 annot-version=v1.0 ATGGAAACCAGTCACCGTCTCATCATCTTCTCCCTCGTGCTCTGTTCTTTCACTGCATTCGTCAGCGCCGGAAACCCTGTCAGGAGCTTCGACTGGACTG TCACCTATGGCGACATCCACCCTCTCGGCGTTAAACAGCAGGGGATTCTGATCAATGGGAAATTCCCTGGTCCGAGTATCCAGGCAGTAACCAATGACAA TCTCATCATCAACGTCCACAACCACCTCGACGAGCCTTTCCTGATTTCCTGGAGTGGGATTCAGAACAGGAAGAATTCGTACGTGGACGGAGTGTTGGGG ACGACGTGCCCAATTCCGGCGGGGAAAAACTACACTTACAAGCTTCAGGCGAAAGATCAGATTGGTACGTTTTACTACTTCCCTTCGCTAGCATTCCACA AGGCAGCTGGTGGGTTTGGTGCCATCAATGTCCTCAGCCGTCCGATGATCCCCGTCCCGTTCGCTCCCCCTGCCGATGACTTCACTCTCCTCGTCGGAGA TTGGTACACCACTGACCACAAGGTTTTGAAGGCCAAGCTAGATAGGGGTCACAAACTTGGCCACCCTCATGGGATTTTGATTAATGGTCATGGCCCTCAT TCCCCTCCATCATTCACTTTCCAATCTGGCAAGACGTACAGGCTGAGGATTACGAACGTTGGGCTAGAAAACTCTATTAACTTCAGGATTCAGGGGCATA GTAACTTGAAGCTTGTTGAGGTAGAAGGAACTCACACCGTTCAGACTGTGTACTCTTCGATAGATGTTCATGTGGGACAGTCAATGTCGATTCTCGTAAC TGCTGACCAACCAGCTAAGGACTACAAAATCATCGTTTCGACTCGATTCTCGAACAAGGTCATCTCATCTGCCGCAATCCTCCATTATCAAGGCGCCAAC GGACTAGCCACTGGTCTGCTTCCCGTACCTCCGAACCAAATCAGTTGGTCCCTCCAACAAGCCCTTTCCATCAGGACGAATGTGTCAGCGAGTGCAGCAA GGCCGAATCCACAGGGATCGTACCACTACGGACAGGTGAACATTTCCAGAACTATAATCCTGAGGACCGCACCTGCTCAGGTTGAGAAGAAGCAGAGATA CGGGGTCAATGGGGTTTCGTTCGTTCATGGCGATACTCCATTGAAGCTCGCCGATCATTTCAACATCTCCGGAGTTTTCAAAGCCGGAAGCATCCCTTAC ACTCCGCCAGATCACCCCAGGAAGCTCCACCTGGATTCGTCGGTGATGCTAGCCGATTACAGGTCTTTCGTTGAGATCGTGTTTCAGAATCGTGAGAAGA TCGTACAGACTTGGCACATCAATGGCCATTCCTTCTGGGTAGTTGGGATGGATCTTGGAACATGGAAGCCAGAGAGCAGGAGAGGGTACAATCTAAACGA CGCCGTTTCGCGTTACACTGTACAGGTGTATCCGAAGTCGTGGACGGCAGTATTCGTGGCTCTGGACAACGTCGGAATGTGGAACGTGCGGACGGAGTAC TGGCAGAGGCAGTACCTTGGGGAACAGTTGTATCTCAAAGTCTTCACCGATTCGAATTCACGGAGGGATGAGTACTTGATGCCGGAGCACTCTCTTCTCT GCGGGAAAGCTAAGGATATGAAGAAGTCGTTAGTTAGGACTTTGGACTTAGGACTTAGGAGCTCCATCATCTTCAAGAGATGTGCACTGATGGTTCTGAT GCCCCGTATGTTGATGAGCTCTCCAATCATAGCAATCGATCTTCCTTATTTGCCCCGTATGTTCTTTTTCACTCGAGTAATGTGCCTACTGTCGAATTCC GAATTGTGTAGAGGTGTACCTGCTTGGCTACACTATATACCCGGGACTGTCTTCCGAACAGATAATGAGAGCTTTAAGAATCATATGCAGAGTTTCATGA CTTACATTGTGAATCTTATGAAGCAAGAGAAACTTTTTGCGTCTCAGGGAGGTCCTATCATCTTGGCTCAGGCGAGTAAAACTATAATCCAGGAGAAAGT GGAAAATGAATATTGGCTTTATGAGCAATATTATGGAGAAGGTGGGAAGAAATATGCCATATGGGCAGCTAATATGGCTGTTGCTCAAAATACTGGTGTT CCTTGGATAATGTGCCAGCAATTTGATGCTCCCGACTCGGTGATCAATACTTGCAATGATTTTTACTGTGATGGATTTATACCTCTTTCTCCAAATAAAC CCAAGATTTGGACCGAGAATTGGACTGGATGGTTTCAGTATTTCGGGTCCCCTAATCCTCATCGGCCAACTGAAGATCTTGCCTATTCTGTTGCTCGGTT CTTCCAGAAAGGCGGTAGTTATCATGGAGGAACAAATTTTGGCCGCACTTCTGGTGGACCATTCATTACCACCAGTTATGACTATGACGCCCCAATTGAT GAGTACGGTTTACCTAGGCTTCAAAAATGGGGACACCTTAAAGAACTCCACAAAGCTATAAAATTATGTGAGAACGCTTTGGCAACCAGCCAGCCAAACA GTATCTCCCTAGGACCTACTCAAGAGGTTGATGTTTATGCTGATGCGTCAGGAGCATGTTGTGCGTTTCTAGCTAACTCTGATGCCCAAAATGACATGAC CGTCACATTCCGAAATTCATCATACTACCTGCCGGCATGGTCAGTCAGTATCTTATCGGACTGCAGGAATGAAATTTTTAACACGGCGAAGGTAACGTCT CAGGCCTCCGTGGTTGAAATGGTTCCTGAGGGCATGAGGCCATCAATAAAGTCATCGGAGATAGACTCAACAACTCTGAACTGGGAAGTGTTTGTGGAAA AAGCAGGCATTTGGGGAGAAGCTGATTTTGTCAAAAACAGCTTGGAGGATCACATTAATGCCACAAAAGATGCTAGTGACTATCTATGGTACACAACAAG CATTACTGTTGGTGATGATGAACAATTCTTAAAACAAGGACAACCTCCAGTTCTCACGATTGCCTCAAAGGGTCATGCTCTCCATGTTTATGTCAATGGG CAACTTCAAGGTAGCGCGTTTGGAAATGGCGCATTTGCTTCTTTCGAATATAAGCAAACCATAACTCTGAAGGCAGGGAATAACTTAATCTCTCTGCTCA GCATGACTGTTGGCCTAACGTCTACTGGTCCTCGGTACGAATGGACCCCAGCAGGACTCACTAGTGTCAAGATCGAGGGGCTCAATGGTGGGACAATGGA CTTATCCACTTACGAATGGACTTATAAGATTGGTATGCAAGGAGTAAATCTTGCTATACATTCACCAAGTGGTATAAACAGCGTGAACTGGACACCAACT CCAATTGTGCCAAAAATGCAGCCTTTGACATGGTACAAGACAACTGTGGACCCACCGACCGGAGACGAACCCATAGGACTTGATATGCTCAACACGGGGA AGGGTCTTGCTTCGTTGAATGGAGAAGAAATTGGCAGATACTGGCTCAGGGAAAGCCCTAAAGACGACAGATGCACTGAAGAATGTGATTACAGGGGCAA GTTGGCTCTAACAAGTGGTCCAATGGCCGAGTTTATGGTGCAAAAATATTCTACAGGTTGTGGGGAACCCACACAGAGATGGTACCACATTCCTCGATCA TGGTTCAAGCCATCCGGAAACATTCTCGTGATCTTGGAAGAGATAGGCGGTGACCCAACATTGATCAAGTTCTCGAAACGAAGAATCTCCGGAGTCTGCG CTTCCATCGGAGAGGATTACCCCTCCGGAACTCTTCATCTACAATGCCCTAAAGATGCCAATATATCGAGCGTGAAATTCGCTAGCTTCGGCACTCCTAC TGGAACGTGTGGATCATACAAGGAAGGGGACTGCCACGATCCTAACTCCATTTTCGCTGTCGAAAAGGAATGTTTGAACAGAAACGAATGCAGCATCCAA GTATCAGAAGTGAAGTTCAGCATGGGGAATTGCCGTGCAGATTCGACTGCGAGGAAAAGGCTTGCTGTGGAGGTAGTCTGTGGCAGCTCATGA
AA sequence Show only first row Show all	>Lus10023977 pacid=23160670 polypeptide=Lus10023977 locus=Lus10023977.g ID=Lus10023977.BGIv1.0 annot-version=v1.0 METSHRLIIFSLVLCSFTAFVSAGNPVRSFDWTVTYGDIHPLGVKQQGILINGKFPGPSIQAVTNDNLIINVHNHLDEPFLISWSGIQNRKNSYVDGVLG TTCPIPAGKNYTYKLQAKDQIGTFYYFPSLAFHKAAGGFGAINVLSRPMIPVPFAPPADDFTLLVGDWYTTDHKVLKAKLDRGHKLGHPHGILINGHGPH SPPSFTFQSGKTYRLRITNVGLENSINFRIQGHSNLKLVEVEGTHTVQTVYSSIDVHVGQSMSILVTADQPAKDYKIIVSTRFSNKVISSAAILHYQGAN GLATGLLPVPPNQISWSLQQALSIRTNVSASAARPNPQGSYHYGQVNISRTIILRTAPAQVEKKQRYGVNGVSFVHGDTPLKLADHFNISGVFKAGSIPY TPPDHPRKLHLDSSVMLADYRSFVEIVFQNREKIVQTWHINGHSFWVVGMDLGTWKPESRRGYNLNDAVSRYTVQVYPKSWTAVFVALDNVGMWNVRTEY WQRQYLGEQLYLKVFTDSNSRRDEYLMPEHSLLCGKAKDMKKSLVRTLDLGLRSSIIFKRCALMVLMPRMLMSSPIIAIDLPYLPRMFFFTRVMCLLSNS ELCRGVPAWLHYIPGTVFRTDNESFKNHMQSFMTYIVNLMKQEKLFASQGGPIILAQASKTIIQEKVENEYWLYEQYYGEGGKKYAIWAANMAVAQNTGV PWIMCQQFDAPDSVINTCNDFYCDGFIPLSPNKPKIWTENWTGWFQYFGSPNPHRPTEDLAYSVARFFQKGGSYHGGTNFGRTSGGPFITTSYDYDAPID EYGLPRLQKWGHLKELHKAIKLCENALATSQPNSISLGPTQEVDVYADASGACCAFLANSDAQNDMTVTFRNSSYYLPAWSVSILSDCRNEIFNTAKVTS QASVVEMVPEGMRPSIKSSEIDSTTLNWEVFVEKAGIWGEADFVKNSLEDHINATKDASDYLWYTTSITVGDDEQFLKQGQPPVLTIASKGHALHVYVNG QLQGSAFGNGAFASFEYKQTITLKAGNNLISLLSMTVGLTSTGPRYEWTPAGLTSVKIEGLNGGTMDLSTYEWTYKIGMQGVNLAIHSPSGINSVNWTPT PIVPKMQPLTWYKTTVDPPTGDEPIGLDMLNTGKGLASLNGEEIGRYWLRESPKDDRCTEECDYRGKLALTSGPMAEFMVQKYSTGCGEPTQRWYHIPRS WFKPSGNILVILEEIGGDPTLIKFSKRRISGVCASIGEDYPSGTLHLQCPKDANISSVKFASFGTPTGTCGSYKEGDCHDPNSIFAVEKECLNRNECSIQ VSEVKFSMGNCRADSTARKRLAVEVVCGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023977 [exp]	0	1
AT3G45600		TET3	tetraspanin3 (.1)		Lus10023218 [exp]	2.8	0.9919
AT2G23440			unknown protein		Lus10002969 [exp]	3.3	0.9341
					Lus10038720 [exp]	4.0	0.8990
					Lus10000400 [exp]	4.0	0.9889
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	4.9	0.9889
AT1G71680			Transmembrane amino acid trans...		Lus10008263 [exp]	5.2	0.9574
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	5.7	0.9889
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	6.3	0.9889
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	6.9	0.9889
					Lus10009372 [exp]	7.5	0.9889

Compare expression of checked genes

Lus10023977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.