Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66770 494 / 3e-169 GRAS GRAS family transcription factor (.1) AT3G50650 445 / 1e-150 GRAS SCL7 GRAS family transcription factor (.1) AT1G21450 199 / 3e-56 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 196 / 1e-55 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT3G03450 196 / 2e-55 GRAS RGL2 RGA-like 2 (.1) AT1G50600 195 / 2e-54 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 186 / 1e-52 GRAS SCL21 SCARECROW-like 21 (.1) AT3G54220 186 / 7e-51 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G66350 176 / 3e-48 GRAS RGL1 RGA-like 1 (.1) AT5G17490 172 / 1e-46 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041740 [exp] 904 / 0 AT5G66770 631 / 0.0 GRAS family transcription factor (.1) Lus10016596 [exp] 207 / 3e-59 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 202 / 3e-57 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10041540 [exp] 202 / 2e-56 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 202 / 5e-56 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10036623 [exp] 194 / 6e-55 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 189 / 1e-52 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 188 / 5e-52 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 186 / 2e-51 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G123800 [exp] 534 / 0 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.007G026300 [exp] 525 / 0 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.001G361700 [exp] 211 / 6e-61 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.012G020200 [exp] 207 / 1e-60 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 206 / 4e-60 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G473200 [exp] 205 / 1e-59 AT1G55580 405 / 4e-139 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.011G131100 [exp] 202 / 2e-57 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.001G326000 [exp] 203 / 6e-57 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.001G409500 [exp] 201 / 9e-57 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.005G186500 [exp] 196 / 4e-55 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10024014 pacid=23141438 polypeptide=Lus10024014 locus=Lus10024014.g ID=Lus10024014.BGIv1.0 annot-version=v1.0 ATGGCTTATATGTGTGCCGACAGTGGAAATCTGATGGCGATAGCCCAACAAGTGATAAAGCAAAAGCAGCAGAGAGAGCAGGAGCAGCAACAGAAAAACC ACAACCAGCAGCAGCAGCAACAGATATTGGGGATGACGACTTCCTTTCCTTTGACTCCTTGGCCCGCTTCAACCCCTGCCAATCCCAATCTAGGTTACGG GCTATCCGCTGCCCCTGGGTTTTCCGACCCGTTTCAAGTCCCTCCAGCGACAGACGCCGCCGAGGTTGGATTCCCGTTCCCCCAAATCAACCACCACGCT GGCGGCGGCGGAACCGGGTTTAGGTTCTCGGATTTCGGAGGCGGTGCCCCGGGTGAGTTTGACTCGGACAGCAACCCTGCTGATTTTTGTCTCTACGGTT CCGATTCGTTTCGACTCAATGTAGCCTGCTCGCCTTCGTCAGATCTCAATCGGATCCTTTTCCCCGAACCCGCTCTTAAAGCCCAAAACCCGATCCAGCC ACTTCCTACCTGGAATCCCCCATCCTCGCCTCCACCGCCGCCGGAGGCGGCTGCGGGTGCGGCTGTGAAAGAAGTTAAGTCGGCCAACACATCTCCTCCT CCTCCACCGCCGGTACCGAAACCCCCAGCAGGTCCCACAGTATGTTCGAATTTACTAGAAATAGAGCCGTCGTCACCGCCGCTTCTGAAATCCCTACTGG AGTGTGCGCGACTCTCCGAATCAGAAACTGAATCAGCCGTTAAATCCCTGGTTAAAATCCGGGAGTCGGTGTCGGAGCACGGAGATCCGACTGAGCGGGT CGCGTATTACTTCACCGAAGCTCTGTACAATCGACTTTCTAAGCAAGCAGGGGAAAACTTTATCATGTTCGAGACCACCAGCGATGAGTTCACTCTGTCC TACAAATCACTAAACGACGCTTGCCCGTATTCGAAGTTTGCTCACTTGACGGCGAATCAAGCCATTCTCGAGGCAACGGAAACGGCGGCGAAGATTCACA TAGTAGATTTCGGGGTCGTTCAAGGTGTTCAATGGGCAGCTCTATTGCAAGCTTTGGCGACCCGATCGGCCGGGAAACCCGCTCTGGTTCGGATTTCGGG TATACCCGCCCCGGCTCTGGGAAGTTCACCTGCTGCATCTCTCTTCGCCACTGGGAAAAGGCTTCTGGATTTCGCCAAGCTATTGGATCTGAACTTCGAG TTCGAACCGATACTTACTCCAACACAGGACCTGAACGAATCTTGCTTCCGGGTCGAACCAGATGAAGTATTAGCCGTCAATTTCATGCTTCAGCTATTCA ATTTACTGGACGAGAGTACGGCCACGGTGGAGACGGCTCTGAGAATGGCGAAATCGCTGAACCCGAGGATCGTTACTCTTGGGGAGTACGAAGTGAGCTT GAACCGAATCGGGTACCTGACCCGGTTCAACAACGCACTTAGATACTACTCCGCAGTGTTCGAGTCTCTGGAGCCGAGCTTGAGCAGAGACTCGACGGAG AGGCTTGAAGTCGAGAGGATGTTGCTTGGTCGGAGAATCGCCGGAGTAATTGGCCCCGAGGAACCCGGAGTCGTCAAAAGGGAGCGGATGGAAGACAGGG AGCAGTGGCGATTGCTGATGGAGATGTGCGGTTTCGAACCAGTAGCACTGAGCAATTACGCAATGAGTCAGGCTAAGATCCTCCTATGGAACTATAACTA CAGCCCACGGTACTCTCTGGTGGAATCCAAACCTGGGTTCATCTCATTAGCCTGGAAAGAAGTTCCTCTCCTCACTGTTTCTTCATGGCGTTGA
AA sequence Show only first row Show all	>Lus10024014 pacid=23141438 polypeptide=Lus10024014 locus=Lus10024014.g ID=Lus10024014.BGIv1.0 annot-version=v1.0 MAYMCADSGNLMAIAQQVIKQKQQREQEQQQKNHNQQQQQQILGMTTSFPLTPWPASTPANPNLGYGLSAAPGFSDPFQVPPATDAAEVGFPFPQINHHA GGGGTGFRFSDFGGGAPGEFDSDSNPADFCLYGSDSFRLNVACSPSSDLNRILFPEPALKAQNPIQPLPTWNPPSSPPPPPEAAAGAAVKEVKSANTSPP PPPPVPKPPAGPTVCSNLLEIEPSSPPLLKSLLECARLSESETESAVKSLVKIRESVSEHGDPTERVAYYFTEALYNRLSKQAGENFIMFETTSDEFTLS YKSLNDACPYSKFAHLTANQAILEATETAAKIHIVDFGVVQGVQWAALLQALATRSAGKPALVRISGIPAPALGSSPAASLFATGKRLLDFAKLLDLNFE FEPILTPTQDLNESCFRVEPDEVLAVNFMLQLFNLLDESTATVETALRMAKSLNPRIVTLGEYEVSLNRIGYLTRFNNALRYYSAVFESLEPSLSRDSTE RLEVERMLLGRRIAGVIGPEEPGVVKRERMEDREQWRLLMEMCGFEPVALSNYAMSQAKILLWNYNYSPRYSLVESKPGFISLAWKEVPLLTVSSWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66770	GRAS		GRAS family transcription fact...		Lus10024014 [exp]	0	1
AT5G66770	GRAS		GRAS family transcription fact...		Lus10041740 [exp]	1.4	0.8843
AT3G27520			unknown protein		Lus10022283 [exp]	2.0	0.8197
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	3.5	0.8258
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	4.5	0.8464
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022046 [exp]	11.0	0.8079
AT2G16030			S-adenosyl-L-methionine-depend...		Lus10018506 [exp]	15.5	0.8046
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	15.8	0.8139
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	16.2	0.8056
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	16.8	0.8128
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10019814 [exp]	21.2	0.8124

Compare expression of checked genes

Lus10024014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.