Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36710 447 / 3e-153 GRAS AtHAM4 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) AT4G00150 186 / 8e-52 GRAS ATHAM3, SCL6, LOM3 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) AT3G60630 175 / 2e-47 GRAS ATHAM2, LOM2 LOST MERISTEMS 2, ARABIDOPSIS THALIANA HAIRY MERISTEM 2, GRAS family transcription factor (.1) AT2G45160 174 / 5e-47 GRAS ATHAM1, LOM1 LOST MERISTEMS 1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, GRAS family transcription factor (.1) AT1G66350 117 / 7e-28 GRAS RGL1 RGA-like 1 (.1) AT3G54220 114 / 2e-26 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT2G01570 114 / 2e-26 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G41920 102 / 3e-23 GRAS GRAS family transcription factor (.1) AT5G17490 101 / 2e-22 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G63100 100 / 5e-22 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041721 [exp] 992 / 0 AT4G36710 456 / 1e-156 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Lus10028934 [exp] 235 / 1e-68 AT4G00150 397 / 7e-130 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10004353 [exp] 234 / 4e-68 AT4G00150 390 / 2e-127 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Lus10012554 [exp] 131 / 5e-32 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 130 / 7e-32 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10006322 [exp] 120 / 9e-29 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10029592 [exp] 120 / 2e-28 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10033583 [exp] 113 / 3e-26 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10016496 [exp] 113 / 5e-26 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029200 [exp] 602 / 0 AT4G36710 419 / 4e-142 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.005G125800 [exp] 590 / 0 AT4G36710 466 / 1e-160 Arabidopsis thaliana HAIRY MERISTEM 4, GRAS family transcription factor (.1) Potri.003G110800 [exp] 222 / 2e-63 AT4G00150 366 / 2e-117 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G122800 [exp] 218 / 4e-62 AT4G00150 376 / 1e-121 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060500 [exp] 195 / 3e-54 AT4G00150 429 / 8e-143 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144200 [exp] 191 / 1e-52 AT4G00150 411 / 2e-135 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.014G060200 [exp] 187 / 1e-51 AT4G00150 420 / 2e-139 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.002G144700 [exp] 181 / 5e-49 AT4G00150 437 / 2e-145 LOST MERISTEMS 3, ARABIDOPSIS THALIANA HAIRY MERISTEM 3, GRAS family transcription factor (.1) Potri.001G326000 [exp] 123 / 1e-29 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 117 / 1e-27 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10024029 pacid=23141439 polypeptide=Lus10024029 locus=Lus10024029.g ID=Lus10024029.BGIv1.0 annot-version=v1.0 ATGAAAGTTCCACTTCCAGTTTCCTGCAAATCCACCCTCCTCAATTCCGACTCATTAATCCCACCACCTCCTCGCACCACCACCAACAACAACAACAATA ATAATCTCTCCCTCGCTCCTTCCATCTGCTACGAGCCCACCTCCGTCCTCGAACTCGGCCGCACCCCTACTAGCCCCGTCGCCACCAAACCCCCGCCTGC AGACCCCATCGATTGGGATGATCACGTCCTCGAGAATTTCAATTGGGATTCCATCATGAAGGAATTGGATTTCCATGATCATACTAACAACAATAACAAC AACAATCCAATCAAGCCCAGCAACCTCATTAATCTCCCCCACTTCGACACGCCATCAGCAGGGGATCATCACCACGTTTTCGGGTCATCCCTACCCGGCC TCGACCAATCCACCCAGTTCGTCCATCATCCTGACTACGCCGACGTTTTCCTCAACTCAATCCCTAACACCCACGATTTCAGCACCTTAGAGCTCTCTCA CCACAGCTTCCCTAATTCCAATTCCAATTTCCAAGGGTTCGATTCCGTACAGGAGCTGATTCGAGCCGCCGACTGCTTCGATTCCAACCAGTTCCAGCTC GCTCACGCGATATTGGAGCGGCTCAATTCCCGACTGCCCTCGTCAGGGAAGCCGCTCCACCGTGCGGCGATCTTCTTCAAAGAAGCTCTGCAGTCTCTTC TCACGGTTTCGACCCGGCCTCCTGCTTATCTCTCGTCCTGGTCTGAAACGGTGGAGACGATTAGGGCATACAGAGCCTTCTCCGGGATATCTCCGATTCC GATGTTCGCTCACTTCACCGCCAATCAGGCGTTGCTGGACTCGTTAGACGGACCTTCGATAACGTTCATCCACGTCGTGGATTTCGATATTGGGCTAGGG TGTCAGTACGCTTCCTTCATGCGGGAGCTGACGGAGCGGGGGTCCGTTTGTGAATTCGGAGCTCCTATTCTCCGGGTGACAGCGGTGGTTACAGAGGAGT ACGCGATCGAGACGAAGTTAATTAGAGAAAGTCTGACTCAATTCGCCGACGAGTTGAAATTGAGGTTCCAGATTGAGTTCGTGCTTCTCCGGACTTTCGA AATGCTGTCGTTTAAGTCGATTAAGTTCGTTGAAGGAGAGAAGACGGCCGTTCTGTTATCCCCTTTTATTTTCCGCCGTTTGAGCCTGACGAGCGGCGTG ACAGTGTTTATTTCGGATCTTCGGCGGGTGTCTCCAAGCGTTGTCGTTTTCGTTGACGGGGAAGCGTGGGGGGAATCCGGAACGTCGTCGTTCAGGCGGA ATTTCGTCAATAATTTAGAATTCTATTCGATTATGTTTGAGTCATTGGACGGCGGCGGCGCGGCGATGGGGAGCGGAGAATGGGTGAGAAAGATTGAGAT GCTGCTGATGAGACCGAGGATTTTGGCGGCGGTGGAAGGGTGCGGACGAGGGGCGGCGCTGCCGCCGTGGAAGGAAGTGTTCGCCGGGGCGGGGATGTGG CCGATTGGTTGGAGTCAGTTCGCGGACTTTCAAGCGGAGACGCTGCTGGGGAAAGTTCAGTCGAGAGGATTCTACGTGGCGAAACGGCAGGCTGAGTTGG TGCTTTGCTGGCATGATCGGCCCCTCGTTGCCACATCAGCATGGAGGTGTTAG
AA sequence Show only first row Show all	>Lus10024029 pacid=23141439 polypeptide=Lus10024029 locus=Lus10024029.g ID=Lus10024029.BGIv1.0 annot-version=v1.0 MKVPLPVSCKSTLLNSDSLIPPPPRTTTNNNNNNNLSLAPSICYEPTSVLELGRTPTSPVATKPPPADPIDWDDHVLENFNWDSIMKELDFHDHTNNNNN NNPIKPSNLINLPHFDTPSAGDHHHVFGSSLPGLDQSTQFVHHPDYADVFLNSIPNTHDFSTLELSHHSFPNSNSNFQGFDSVQELIRAADCFDSNQFQL AHAILERLNSRLPSSGKPLHRAAIFFKEALQSLLTVSTRPPAYLSSWSETVETIRAYRAFSGISPIPMFAHFTANQALLDSLDGPSITFIHVVDFDIGLG CQYASFMRELTERGSVCEFGAPILRVTAVVTEEYAIETKLIRESLTQFADELKLRFQIEFVLLRTFEMLSFKSIKFVEGEKTAVLLSPFIFRRLSLTSGV TVFISDLRRVSPSVVVFVDGEAWGESGTSSFRRNFVNNLEFYSIMFESLDGGGAAMGSGEWVRKIEMLLMRPRILAAVEGCGRGAALPPWKEVFAGAGMW PIGWSQFADFQAETLLGKVQSRGFYVAKRQAELVLCWHDRPLVATSAWRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10024029 [exp]	0	1
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10029787 [exp]	2.4	0.9139
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10016742 [exp]	9.4	0.8679
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	11.0	0.8796
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10022436 [exp]	11.1	0.8234
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	12.2	0.8764
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	12.5	0.8791
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	12.5	0.8795
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	16.4	0.8475
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	16.6	0.8774
AT1G23530			unknown protein		Lus10013015 [exp]	17.7	0.8734

Compare expression of checked genes

Lus10024029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.