Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06060 420 / 6e-148 TSC10A TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19200 402 / 4e-141 TSC10B TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50690 72 / 3e-14 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 72 / 3e-14 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT2G29360 67 / 2e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 65 / 1e-11 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT2G29370 64 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 62 / 7e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 61 / 1e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 61 / 2e-10 ATHSD3 hydroxysteroid dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039501 [exp] 337 / 2e-117 AT3G06060 260 / 2e-87 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010509 [exp] 310 / 1e-106 AT3G06060 278 / 3e-94 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034045 [exp] 199 / 5e-64 AT3G06060 176 / 2e-55 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010510 [exp] 150 / 1e-44 AT5G19200 192 / 2e-61 TSC10B, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010511 [exp] 123 / 4e-35 AT3G06060 105 / 4e-29 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 69 / 1e-12 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 62 / 9e-11 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10036980 [exp] 62 / 1e-10 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 61 / 1e-10 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191800 [exp] 442 / 8e-157 AT3G06060 448 / 2e-159 TSC10A, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 69 / 6e-13 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 69 / 6e-13 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G181600 [exp] 62 / 9e-11 AT1G24470 331 / 2e-113 beta-ketoacyl reductase 2 (.1) Potri.012G101900 [exp] 62 / 1e-10 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 61 / 3e-10 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.006G089800 [exp] 60 / 5e-10 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G100000 [exp] 60 / 6e-10 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.010G142600 [exp] 59 / 9e-10 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G048900 [exp] 58 / 3e-09 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024146 pacid=23141442 polypeptide=Lus10024146 locus=Lus10024146.g ID=Lus10024146.BGIv1.0 annot-version=v1.0 ATGGCGGATTTCAATCTCCCTTACCTATCTCTACTCACCGTACCTCTATTTCTCATTTTCGTTCTATCCCTCATAGTCAGGCCCCGCCCCGTCAGAATCA CACTCAAGAACCGCCATGTACTAATCACCGGTGGATCCAGTGGCATCGGTCTAGCCATGGCCCACCATGCCGCCAACGAAGGTGCCCGCGTCTCCATCCT GGCGCGATCCCTTGCTAAGCTCGAAGAAGCTAGGGATTCCATTAAGCTCTCTACCGGCGTCGAGGTCGCGGTATTTGCAGCGGATGTGAGGGATTTCGAC GCCGTGCAGAGTGCGATGTCGTCGGCGGATCCAATCGACGTTTTGGTAGTGAATCAGGGAGTGTTTTCCGCGGAGGAGCTGGAGAAGCAGTCGTTGGACG AAATTAGGTTTATGATCGATGTCAATCTGATTGGAAGTTTCAACGTCATCAAAGCTGCTTTGCCTGGAATGAAGAGGAGAGAAGATAGGAGTCCTGTTTC TATTGCTCTCGTGTCTTCACAAGCAGGCCTGGTTGGGGTATATGGATATACAGCTTATTCAGCCAGCAAATTTGGTCTTCGAGGGTTGGCTGAAGCGCTG CAGCAAGAAGTCATTGCTGATGACATCCATGTCTCTCTTGTATTCCCTCCGGATACTGATACTCCTGGGTTAGAGGAAGAGACTAAGACAAGGCCACAGT TAACTAGCATCATTGCAGCTTCATCTGGTGCAATGAAGGCTCCCGAAGTTGCAAAGAAAGCATTCGATGGAATCCAGTCTGGTAGCTTCTTTGTACCTTG CAACTTCGAGGGGTTCCTATTGTCCATCGCAACTGCAGGTCTATCCCCACAACGATCGTACTTGATGGCATTTGTCGAGGTGATCAGCGCTGGGATACTG CGCATTGCAGGGCTGTGCTTCCAGTGGAACTGGTATGGAAGTATTGAGAAGTATCACACCATGCAAAGACACGATATGGTGGTTTGGCAATTTGCAAACC TGCTGCCTGCCTGA
AA sequence Show only first row Show all	>Lus10024146 pacid=23141442 polypeptide=Lus10024146 locus=Lus10024146.g ID=Lus10024146.BGIv1.0 annot-version=v1.0 MADFNLPYLSLLTVPLFLIFVLSLIVRPRPVRITLKNRHVLITGGSSGIGLAMAHHAANEGARVSILARSLAKLEEARDSIKLSTGVEVAVFAADVRDFD AVQSAMSSADPIDVLVVNQGVFSAEELEKQSLDEIRFMIDVNLIGSFNVIKAALPGMKRREDRSPVSIALVSSQAGLVGVYGYTAYSASKFGLRGLAEAL QQEVIADDIHVSLVFPPDTDTPGLEEETKTRPQLTSIIAASSGAMKAPEVAKKAFDGIQSGSFFVPCNFEGFLLSIATAGLSPQRSYLMAFVEVISAGIL RIAGLCFQWNWYGSIEKYHTMQRHDMVVWQFANLLPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10024146 [exp]	0	1
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	5.9	0.8699
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	6.2	0.8625
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	11.9	0.8485
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	12.4	0.8432
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	14.0	0.8464
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	15.2	0.8325
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015808 [exp]	15.7	0.8351
AT5G51150			Mitochondrial import inner mem...		Lus10032508 [exp]	16.4	0.8178
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	17.7	0.8426
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	18.9	0.8244

Compare expression of checked genes

Lus10024146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.