Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19510 213 / 7e-61 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G51630 194 / 3e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G11170 194 / 3e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 194 / 4e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 194 / 5e-54 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G17600 192 / 1e-53 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 187 / 7e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 187 / 8e-52 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44630 186 / 3e-51 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT1G56510 184 / 8e-51 ADR2, WRR4 WHITE RUST RESISTANCE 4, ACTIVATED DISEASE RESISTANCE 2, Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010221 [exp] 607 / 0 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017418 [exp] 600 / 0 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10017419 [exp] 593 / 0 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 530 / 3e-178 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 493 / 4e-168 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 485 / 6e-167 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010222 [exp] 424 / 6e-149 AT4G11170 169 / 2e-47 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 391 / 7e-125 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 369 / 7e-120 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070700 [exp] 260 / 5e-77 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 248 / 4e-73 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 249 / 6e-73 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 233 / 1e-70 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G113701 [exp] 239 / 2e-69 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098800 [exp] 223 / 4e-68 AT4G16860 255 / 3e-75 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.005G030318 [exp] 231 / 1e-66 AT1G69550 673 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.017G010800 [exp] 229 / 3e-66 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097300 [exp] 219 / 3e-66 AT4G16860 272 / 8e-81 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070300 [exp] 226 / 9e-66 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10024149 pacid=23141490 polypeptide=Lus10024149 locus=Lus10024149.g ID=Lus10024149.BGIv1.0 annot-version=v1.0 ATGGCTGAAGCTTCTTCTTCTTCTTCTGTATCTCATAGTACCCCGTACGATGTTTTCTTGTGTTTTCGAGGTGACGACACACGCCATGGTTTTACCAGCC ACCTCATGACTGCGCTGCGTGATAGGCAAATCCAAACCTTCATAGACGACATGCTCGAGAAAACAGAGAGCATCGATGCGCTCAAATCCATCATCGAAAG ATGTGCTCTTTCCGTGGTGGTTTTCTCTGAGAGATTTGCGGATTCGGTCTGGTGCTTGGATGAGGTAGCCACTATAGCCCGAAAGATGAAGGAATCCAGG CATCCAGTTTTACCGGTTTTCTACAAAGTGGATCCATCAGACGTGACAGATGACACCGGAAGCTATGCGGCTACTATCCATAGTGAACATAACGCCAGGA GTAGACATGTAGAGGATAAGAAGAGATGGATGGAGGCGTTGAATGTTGTGGCTGATTCTGCTGGTCATACCTCACAGGCCATCAAAAATGAATCTGAATT GATTAAGGCGATTGTGGAAGATGTTCTAAAGAAACTAATTGGCATGTCATCGGTTATCAAGAATGATAGCTTGGTTGCTATGAGTTCACGTATTTTCGAA GTTGAGCGACTATTAGCCATGGACAAAGTAGAAGAGACTCGCATTGTTGGGCTATGGGGAATGGGCGGTGTTGGGAAAACAACTCTAGCAAAAGCATGTT ACGAAAGGATAATTTCGTCCAACAAAGCAATCAAACATCTTTTCATTTCAAACATTAATGAAAAATGTGAAAAGCATCACGACGTTGAAGATGTTGTTTG CAAATACTATTCAAAACTATTGAATGAGGATAAAATTGACCGTGAAGATTTGGATGTTACTTATCGGCGGGGACGTCTTTCGCGCTTGAGAGTATTCATT GTCCTTGACAATGTTGAGACTTGGCAACAATTGGAGCAATTGGTTTTAGGAGGTGTCTCCGATCTCAACAAAGTTTTTGCAGCTGGAAGTAGGATCCTAG TGACGACAAGAAATAAAAAAGTGTTTAAAAAAGCAACAATAGAGATTTACAAAGTTGAGTGTTTGAATGACGAGGAATCCACCCACTTGTTTAGCCTGCA TGCGTTTAAACAAGACCACCCTCCAGGTAATTGGATGGATATCTCGTCTTGCAACATCATATTGCAAGGGAAATCCCTTGGCGCTCCAAATTTTAGGGGG TGCATTGTGCCGTCAAGATATGCATTATTGGGAAAGTTTCTTAAGCGGGTTGAAACAAACTGGAGAGATAGATATCCGCAACATTCTTAA
AA sequence Show only first row Show all	>Lus10024149 pacid=23141490 polypeptide=Lus10024149 locus=Lus10024149.g ID=Lus10024149.BGIv1.0 annot-version=v1.0 MAEASSSSSVSHSTPYDVFLCFRGDDTRHGFTSHLMTALRDRQIQTFIDDMLEKTESIDALKSIIERCALSVVVFSERFADSVWCLDEVATIARKMKESR HPVLPVFYKVDPSDVTDDTGSYAATIHSEHNARSRHVEDKKRWMEALNVVADSAGHTSQAIKNESELIKAIVEDVLKKLIGMSSVIKNDSLVAMSSRIFE VERLLAMDKVEETRIVGLWGMGGVGKTTLAKACYERIISSNKAIKHLFISNINEKCEKHHDVEDVVCKYYSKLLNEDKIDREDLDVTYRRGRLSRLRVFI VLDNVETWQQLEQLVLGGVSDLNKVFAAGSRILVTTRNKKVFKKATIEIYKVECLNDEESTHLFSLHAFKQDHPPGNWMDISSCNIILQGKSLGAPNFRG CIVPSRYALLGKFLKRVETNWRDRYPQHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19510			Disease resistance protein (TI...		Lus10024149 [exp]	0	1
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10023267 [exp]	7.1	0.7099
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	10.2	0.7022
AT5G24320			Transducin/WD40 repeat-like su...		Lus10022377 [exp]	11.0	0.6605
AT4G32790			Exostosin family protein (.1)		Lus10000608 [exp]	15.7	0.7083
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	15.7	0.6382
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Lus10027807 [exp]	16.2	0.6491
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	16.5	0.6803
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	18.2	0.6465
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10019014 [exp]	18.7	0.6582
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	21.0	0.6471

Compare expression of checked genes

Lus10024149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.