Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 602 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 476 / 5e-145 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 171 / 3e-43 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58390 159 / 2e-39 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 155 / 6e-38 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 155 / 6e-38 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12210 153 / 2e-37 RFL1 RPS5-like 1 (.1) AT3G07040 153 / 2e-37 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G43470 152 / 4e-37 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G35450 150 / 8e-37 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007261 [exp] 961 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 957 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 877 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039548 [exp] 739 / 0 AT3G14460 164 / 6e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 588 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 566 / 5e-179 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 548 / 5e-174 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 547 / 2e-170 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039549 [exp] 355 / 2e-113 AT3G14470 175 / 8e-50 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029300 [exp] 1040 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 999 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 946 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 943 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 942 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 929 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 921 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 915 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.003G055600 [exp] 909 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 883 / 0 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10024173 pacid=23141530 polypeptide=Lus10024173 locus=Lus10024173.g ID=Lus10024173.BGIv1.0 annot-version=v1.0 ATGGCTGCTACTGCTGCGTTGGTGGGAGGATCATTCCTCTCTGCTTTTCTTCAAGTTCTGCTCGACAGGATGGCTTCTCCCAACTTCCTTAGCTTCTGCA AGGGTCAATCTCTTAACGAAAAATTGCTCAAGAAGCTGCTCACTCTTCTTAATTCCGTCAACGGACTGCTCGACGACGCGGAGGAGAAGCAGATCACCAA ACCCTCGGTGGAGAAGTGGCTCAACAACCTCAAGGATGCCATCTACGAAGCGGACGATTTGTTGGATGAAATTACTTACGAAGCCCTTAAATTGGAGGCT GACTCCGGAGCTCTCACCACAAACCCTAGAAAGGTATGGAACCATCTCTTAACTTCTTCTTACAACCCATTTCGCAAGAGTGTTGACGAGAAGTTGAAAG ATGTTCTTGAGAGACTCCAAGACTTAGCTAACCAGAAGGATGTCCTTGGTTTGAGGGATGGTGCTAGTGGTGGTGGTGGAAAGAGAGCCTCGTTTCATAG GATGCCTTCGACTTCTCTTGTAGAAGAATGTGATGTCTATGGCAGGGATGGTGATAAGCAAGCCATTGTTCAGTGGCTGCTGTCTGATGATGATCCAACG GGTAATAATGATTTAGGGGTGATTTTGATTGTTGGGATGGGTGGAATTGGTAAGACCACTCTGGCTCAACTCGTGTACAACGATGAATCGGTTAGGGATC GATTTGGTCTTCAGGCTTGGGTTTGTGTCTCGGAAGAGTATGATGTGTGTAGGCTTACCAAAGATGTGATTGAGGAAGTGACGCTTCGACCTTGTGACAT AAAGTCCCTTAACCAGCTACAGCTTGAGTTGAAAAGGGTTTTGAAGGGGCGTAGGTTTCTACTTGTTCTTGATGATGTTTGGACAGATGATGTTGAAACA TGGGAAATGTTGAGGATGCCATTCAAGTCTGGGGCTAAAGGGAGTAAGATAATTGTCACCACACGCAACCAAAGTGTTGCTTCAGTCATGGGAACCCGCT CTGTTTATTCTCTTAATCAGCTGGACATTAATTACTGCTGGCTGCTGTTTGCAAAACAAGCATTTGGTGGTGAGTTTGGCGAGTATCCTGAGTTGGAAGT TGTTGGTAGAGAAATAGTAAGAAAGTGCAAAGGCATACCTTTGGCTGCAAAAGCACTTGGAGGTCTCTTGTACTCAGAGAGAGATGTCCAGAAATGGGAG AAGGTATCGAACAGTAACCTTTGGGATTTGCCAAGTAATAACATTCTTCCAGCTCTAAAGTTGAGCTATTACTATCTCCCCTCACATCTCAAACAATGCT TTGCATATTGTGCTTTGTTTCCAGCTGATTATGAGTTTAAGAAGGATGAGTTGATACTTTTGTGGATGGCAGAGGGGTTTCTGATCCAACCTGAAGGGAA TACGGAGGTTGAAGAAATAGGAGAACAATATTTTCATGATCTTATCTCAAGATCCTTTTTTCAGCAATCAGCAAGTGATAAATCTTGGGTTACCATGCAT GATCTTATACATGACTTGGCCAGATCTGTGTCTGGAGAATTTTGCTTCAGGCTAGAGGGGAGCAACTACAGGAAGGTTTCTCAAATGACTCGTCATTTAT CAATTGAAACTATGTGGTATAGTCCATCTTCTTTTTTTGAGGCTATCCACAAATCTCCATGTCTGCGTACTTTCCTTCCGCTTCATCGAGACAGCAGGGA CTCTTGTTACTCCCTCGTATCAAATACTGTGTCAGAGACTTGGTTTGCCTGGTCAATGGCTGGGAGACATTCCATTGATGGAGTGGCATTGCACAATGTT CTGTCTACACTAAAGCGATTGAGAGTGCTTTCTTTTTGTGGTTATTACTTGGCTGCTGATTTGTGTGTTTCAATTGGCGTCTTGAAGCATTTGAGATATC TGGATCTATCCGGGACACCTATAGAGAGGCTTTTTGACTCCATGAGCAGTTTATACAATTTGCAAACTCTTCTTTTGAATGATTGCATAAGGCTATCACT TTTGCCTGATTCAATTGGAAAGTTAAAGCGGTTGCAGTACTTGAATCTCTTTCGTACATCAATTATGAAGTTACCTGATTCTTTCAGCTGCTTAACTAAC TTGTATCATCTGAATATTGGGGAGACAAAACTCAGGGAGATGCCATCACAGATGGGTAAACTGTCAAAACTCCGCAAGTTAACTGACTTCTATATTGGAA GAGGAAGTGGGTCTGCAATCAAGGAGTTGGGGCAGCTTCATCATCTTCATGGATCACTTACCATATGGAATCTTCAGTTTCTTGATAATTTCCAAGATGT TTCTCTGGCTAATTTGAAAGGAAAGAAGTGCCTTGAGTCGCTAAAGCTTATATGGAAAGGCGAGACATATGATTCGTTGCAGGAAAGAGCTGTGTTGGAG CAGCTGCAACCAAATAAGAACTTGGGATGTCTTTCAATCATCGGTTATGGAGGAACAAAGTTCCCAAATTGGCTAGGAGACTCCATGTTCTCAACCATAA CATCTGTTGAACTGAGGGATTGTAAGCACTGCTCCACCTTACCACCACTAGGCCAATTAGTATCCTTAACGAGCCTCTCAATTGTCGCATGTGATGCAGT GGTGACGGTTGGATCTGAGTTCTATGGCAGCTCGCCTACGAGAAAGGTTCCATTTTCATCTCTGAAATCTCTGCTATTCGAAAAGATGCAACAATGGCAA GAGTGGAATGTTGCAACTGATGGAAATGACATTGGAGCTTTCCCTGTCCTCGAACAGCTTTACGTAAAAGACTGCCCCAACCTCACTAAAGGACTGCCCA GAAAGCTCCCATACTTGGAAACACTAGTTATAGAGGGGTGCCAGCAGCTAAACATGGCTACAATTCCAAGTGATCAAGCCACCTATAACATGCATTTAGT GGACGAATACCGCGAAGTGTGGCTGAACAGATTTGCTGCTGTTAGGCCGCACCACCTTGAAATTGCTCGATTTTTCTTTCGTTCACCTCTTGAAGGTATG GAGCTGGTAACTGGCATTTCCTCTTCTTTAGAAGAAATTGAGATTTGTAGATCTGACTCGCTCGAGTACTTTCCACTGCATACGTTTCCTAAACTGAAGA CCCTCTCTATCCGTTACTCCGCCAGTCTGAAGCACCTTTCAGAACCTGTAGACAGCACAATTTGTAGGGAAGCCAGTTTTCTCGACTCCTTGGAAGTTTG CAACTGTCCAAATTTGGTTTCATTTCCTAGGGGTGGACTAACTGCCCCAAAAATGACACAACTACTGTTGCAAAGTTGCTCCAAGTTGAAGTCACTTCCT GAAAGGATGCACTCATTGATCCCTTCTCTTGTGCTGCTGAAATTATCCGACTGCCCCGAATTAGAATCGTTTCCTGATGGGGGTCTGCCTTCCAAGCTAC AATCACTTGAGATCTATGGTTGTGACAAGCTCATAGCTCAACGTCAGCAATGGAATCTGCAGTCACTACCTAATCTCTTCAGCTTTTCCATTGGTTCAGA CAAAAACTATGAATCATTTCCAGATGAGGTGGCAATGTTACCTCCCACTCTTACCTCACTTGAAATTAGTGATCTTCATAATCTCAAGTCCCTAGACACC AGATGTTTTCAGCACCTCACTTCACTTGGGAGGTTGAAGATCAAAAACTGCCCTCAACTTCATTTTATACCAGAAGATAAGTTTCCACCTTCCCTGCATC TTTTATCTATACTTATGTGTCCTTTGCTAAGACATAGATGTCAACCAGAAAGGGGGGATCTTTGGCCTTTGATTTCTCATATCCAGGATGTATACATCTA CTGA
AA sequence Show only first row Show all	>Lus10024173 pacid=23141530 polypeptide=Lus10024173 locus=Lus10024173.g ID=Lus10024173.BGIv1.0 annot-version=v1.0 MAATAALVGGSFLSAFLQVLLDRMASPNFLSFCKGQSLNEKLLKKLLTLLNSVNGLLDDAEEKQITKPSVEKWLNNLKDAIYEADDLLDEITYEALKLEA DSGALTTNPRKVWNHLLTSSYNPFRKSVDEKLKDVLERLQDLANQKDVLGLRDGASGGGGKRASFHRMPSTSLVEECDVYGRDGDKQAIVQWLLSDDDPT GNNDLGVILIVGMGGIGKTTLAQLVYNDESVRDRFGLQAWVCVSEEYDVCRLTKDVIEEVTLRPCDIKSLNQLQLELKRVLKGRRFLLVLDDVWTDDVET WEMLRMPFKSGAKGSKIIVTTRNQSVASVMGTRSVYSLNQLDINYCWLLFAKQAFGGEFGEYPELEVVGREIVRKCKGIPLAAKALGGLLYSERDVQKWE KVSNSNLWDLPSNNILPALKLSYYYLPSHLKQCFAYCALFPADYEFKKDELILLWMAEGFLIQPEGNTEVEEIGEQYFHDLISRSFFQQSASDKSWVTMH DLIHDLARSVSGEFCFRLEGSNYRKVSQMTRHLSIETMWYSPSSFFEAIHKSPCLRTFLPLHRDSRDSCYSLVSNTVSETWFAWSMAGRHSIDGVALHNV LSTLKRLRVLSFCGYYLAADLCVSIGVLKHLRYLDLSGTPIERLFDSMSSLYNLQTLLLNDCIRLSLLPDSIGKLKRLQYLNLFRTSIMKLPDSFSCLTN LYHLNIGETKLREMPSQMGKLSKLRKLTDFYIGRGSGSAIKELGQLHHLHGSLTIWNLQFLDNFQDVSLANLKGKKCLESLKLIWKGETYDSLQERAVLE QLQPNKNLGCLSIIGYGGTKFPNWLGDSMFSTITSVELRDCKHCSTLPPLGQLVSLTSLSIVACDAVVTVGSEFYGSSPTRKVPFSSLKSLLFEKMQQWQ EWNVATDGNDIGAFPVLEQLYVKDCPNLTKGLPRKLPYLETLVIEGCQQLNMATIPSDQATYNMHLVDEYREVWLNRFAAVRPHHLEIARFFFRSPLEGM ELVTGISSSLEEIEICRSDSLEYFPLHTFPKLKTLSIRYSASLKHLSEPVDSTICREASFLDSLEVCNCPNLVSFPRGGLTAPKMTQLLLQSCSKLKSLP ERMHSLIPSLVLLKLSDCPELESFPDGGLPSKLQSLEIYGCDKLIAQRQQWNLQSLPNLFSFSIGSDKNYESFPDEVAMLPPTLTSLEISDLHNLKSLDT RCFQHLTSLGRLKIKNCPQLHFIPEDKFPPSLHLLSILMCPLLRHRCQPERGDLWPLISHIQDVYIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10024173 [exp]	0	1
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	1.0	0.8946
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10002528 [exp]	6.3	0.8686
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	8.2	0.8785
AT3G13225			WW domain-containing protein (...		Lus10005845 [exp]	9.0	0.8743
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	11.0	0.8621
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	15.5	0.8659
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	17.9	0.8391
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	19.4	0.8592
AT5G12400			DNA binding;zinc ion binding;D...		Lus10027346 [exp]	20.4	0.8494
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	20.7	0.8555

Compare expression of checked genes

Lus10024173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.