Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06890 237 / 3e-78 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 234 / 4e-77 Nucleotide/sugar transporter family protein (.1.2) AT2G28315 158 / 1e-47 Nucleotide/sugar transporter family protein (.1) AT5G42420 84 / 7e-20 Nucleotide-sugar transporter family protein (.1.2) AT1G76670 85 / 1e-19 Nucleotide-sugar transporter family protein (.1) AT1G21070 84 / 2e-19 Nucleotide-sugar transporter family protein (.1) AT4G39390 81 / 4e-18 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT4G09810 72 / 3e-15 Nucleotide-sugar transporter family protein (.1) AT1G34020 66 / 4e-13 Nucleotide-sugar transporter family protein (.1) AT1G77610 59 / 2e-10 EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008596 [exp] 246 / 2e-81 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10042217 [exp] 239 / 1e-78 AT1G06890 201 / 1e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10009918 [exp] 226 / 2e-74 AT1G06890 493 / 7e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10041314 [exp] 146 / 2e-43 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10021464 [exp] 147 / 5e-43 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041315 [exp] 145 / 1e-42 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 141 / 2e-40 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10033531 [exp] 79 / 2e-17 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10020837 [exp] 78 / 6e-17 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154800 [exp] 247 / 4e-82 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 237 / 3e-78 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.009G011100 [exp] 166 / 2e-50 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 160 / 3e-48 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.005G260300 [exp] 82 / 1e-18 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 82 / 1e-18 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 81 / 3e-18 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 81 / 4e-18 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 76 / 3e-16 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.007G077900 [exp] 73 / 2e-15 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10024194 pacid=23175767 polypeptide=Lus10024194 locus=Lus10024194.g ID=Lus10024194.BGIv1.0 annot-version=v1.0 ATGAGTGAGGGCCAGAAGTTCCAGTTGGGGACGGTGGGTGCTTTGAGCTTGTCGGTAGTATCGTCTGTCTCCATTGTGATATGCAATAAGGCGCTCATCA GCACGCTTGGGTTTACTTTCGATGGACTTCTGACCAACCTAAATGTGTTTGCGTTCAAGTACACCCCTCAAGTCCTGTTCTTCATTGTCCTTTCCTGCAT GATATCGGTATCTGTAAACTTCAGTACATTTCTGGTAATAGGAAAGACATCCCCAGTTACCTATCAGGTGCTAGGACACTTGAAAACATGCCTAGTCTTG GCCTTTGGCTATGTTTTGCTTCGTGACCCATTTAGCTGGAGGAACATTTTAGGTATCCTTGTTGCTATAGTGGGGATGGTACTGTATTCCTACTTTTGCA CGTTGGATACCCAGCAGAAGGCTCAAGAACTATCTACGAAACAACCCGAGGTCAATGAAAGTGAATCTGACCCTCTAATAAATGTGGAGAATGGAAGTGG AAACTTGGCTGATAGTGCCCCTGCATGGAAGTCGAACAAGGACCTGCACGTATGA
AA sequence Show only first row Show all	>Lus10024194 pacid=23175767 polypeptide=Lus10024194 locus=Lus10024194.g ID=Lus10024194.BGIv1.0 annot-version=v1.0 MSEGQKFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFDGLLTNLNVFAFKYTPQVLFFIVLSCMISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVL AFGYVLLRDPFSWRNILGILVAIVGMVLYSYFCTLDTQQKAQELSTKQPEVNESESDPLINVENGSGNLADSAPAWKSNKDLHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10024194 [exp]	0	1
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	6.2	0.7638
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10016265 [exp]	10.2	0.7454
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10027669 [exp]	10.4	0.7371
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	11.8	0.7217
AT5G10110			unknown protein		Lus10022498 [exp]	12.6	0.7579
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Lus10039932 [exp]	12.8	0.7090
AT3G25220		FKBP15-1	FK506-binding protein 15 kD-1 ...		Lus10002339 [exp]	16.1	0.7448
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Lus10030212 [exp]	16.6	0.6959
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	20.6	0.7516
AT2G19730			Ribosomal L28e protein family ...		Lus10006869 [exp]	25.9	0.7331

Compare expression of checked genes

Lus10024194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.