Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58340 65 / 5e-11 MYB myb-like HTH transcriptional regulator family protein (.1.2) AT1G15720 64 / 9e-11 MYB TRFL5 TRF-like 5 (.1) AT1G72740 55 / 3e-08 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17520 55 / 4e-08 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G49950 55 / 4e-08 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT3G49850 55 / 6e-08 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT5G67580 54 / 1e-07 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT2G37025 52 / 8e-07 TRFL8 TRF-like 8 (.1.2) AT1G17460 50 / 2e-06 MYB TRFL3 TRF-like 3 (.1.2) AT1G06910 50 / 2e-06 MYB TRFL7 TRF-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009912 [exp] 828 / 0 AT1G15720 64 / 1e-10 TRF-like 5 (.1) Lus10042209 [exp] 385 / 3e-129 AT1G15720 70 / 1e-12 TRF-like 5 (.1) Lus10008606 [exp] 241 / 1e-73 AT5G59320 84 / 3e-19 lipid transfer protein 3 (.1) Lus10020771 [exp] 119 / 4e-28 AT5G58340 70 / 1e-12 myb-like HTH transcriptional regulator family protein (.1.2) Lus10017320 [exp] 98 / 3e-21 AT5G58340 76 / 8e-14 myb-like HTH transcriptional regulator family protein (.1.2) Lus10001494 [exp] 74 / 1e-13 ND 40 / 0.004 Lus10007348 [exp] 74 / 1e-13 AT3G23730 355 / 2e-121 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10017319 [exp] 64 / 1e-10 AT5G58340 66 / 2e-11 myb-like HTH transcriptional regulator family protein (.1.2) Lus10027621 [exp] 58 / 3e-09 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154500 [exp] 149 / 1e-38 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G053300 [exp] 64 / 2e-10 AT1G68030 115 / 7e-28 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G054401 [exp] 62 / 4e-10 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G147400 [exp] 58 / 5e-09 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.009G087000 [exp] 56 / 2e-08 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.018G066300 [exp] 56 / 2e-08 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.001G292700 [exp] 54 / 6e-08 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.014G004900 [exp] 53 / 2e-07 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 52 / 5e-07 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.002G005600 [exp] 52 / 6e-07 AT5G03780 94 / 1e-20 TRF-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024200 pacid=23175771 polypeptide=Lus10024200 locus=Lus10024200.g ID=Lus10024200.BGIv1.0 annot-version=v1.0 ATGTCTGCAGCATGCCAACCGGACAAAGATATCTCGAGGTGGATTGCGGAATTCCTAATCCGGCAACCAATTCCAGGTTTTCTCGTCGAAAGTGTCATCT CAAGTTTGGATGCTTTAGTCATCGACAGTGATTGGCGCATAAAAAAGAAGCGGACTCTCAACTTGATCCAGCAAGAAATCTCTAGAAAGGGTTCTCTCTC CGAGAAGATGCTCGAATTGTTGGAAACGGTTGAGAAATTCGACAGAGAAAACGGGATTGCAATCACGGAGACGATGAAAGCAGCGTATGCCGCATTGGCG CTGGAATGCACTCTCGAAGTGTTCAGCTTCGAGGTACTTGAGCGCATTTGGAGAGGAAGAGTTCAGAATTTGGAGAAGCTGCAGGAAAGCGAGCTGGTTA CGGACGAATTGCGGAAGTGTTGGGACGACGTGGAGGCTGCTGTTTGGGATCTAGATCTCCGCTATAGGCTGTTGGAATCTACTAAGCGGAAGGATGCATT ACGTCTTGTTGAGGCTTATTTAGAAGAGGCGATGATGGGAAATGATGATGAACCTTCATTTCTGGAGCTTGCGGCTAGAAGGGAGAAGGAGCTGGAAGAA AATGCAAAATACAGACATGATGAGAATGAGAAAGATGCTGATATCAGGCAGGATTTGGGTGCTGAAGGTGGGATGAAAAATGGATTGGAGCAAGTTCCTG ATGACGATAGACAACCAGTTTCCGTATCATCACCAGCTGCTGAAACAAAGAAGGGGTATCGTAGAGTAAAATGCATTCCTTCTCGCAAACATCCAACAAG GAAAGGTAGGTCTACTGGGAACATTCCCTCTAGCAAGTATGATACGTTGTCTACTCCTGAAGTTAAGCTAGTAAAAGATGCACTCCAATCCAGTTCCATC GAGCTACAAGCGGTGGTGAAGGATCCACTTCCTGATGCTTTGTATCGCTCTGAGCCAGTAATTGCTGGACCCCGACAAAATATCTGCAACAAAGAGGCAT TAGTGGAGGATCATAACGGGAAGAATCTGGATGCTTCTGACCCATCTGTCGATGCAATAATGTCTGAATTGAACAGCGAAGGTTTAAATCCTGATGTTCA CGTAGAACAAAGTAACGGAATAGACGAGGATGGCTCCACACCCTCCAATACACTGGATCCTGGACGCATGAGGACTGATGAGAGAAACAAAGCTATTTGT TCATCTGAACGTCTCAGAGTTTCAAAACCCAGCCTGATGGCAAGGAATATTACAGCTTCTGCACATGAGTGGGATGATTCACTTGGCAGCTCGTCTGAAG GAACATCTAATGGTACTAGAAGAAATAAAATAAAAAGGCCAAAGATAGAATTACCTCCGTCAACGAAAGACGATAGCACCCACAATTCGCCTAGGAGAAA AAAGAGAAGATGGAGTGCTGAAGAGGAAGACGCCTTGAGGGAGGGAGTCTATGCGTTTGGTAAGGGGAACTGGAAGGACATTCTAAACTCTCGAAGAGAT ATATTTGCCGGGAGGAGTTCGGTAGATTTGAAGGACAAGTGGAGAAACATGATGTCATAG
AA sequence Show only first row Show all	>Lus10024200 pacid=23175771 polypeptide=Lus10024200 locus=Lus10024200.g ID=Lus10024200.BGIv1.0 annot-version=v1.0 MSAACQPDKDISRWIAEFLIRQPIPGFLVESVISSLDALVIDSDWRIKKKRTLNLIQQEISRKGSLSEKMLELLETVEKFDRENGIAITETMKAAYAALA LECTLEVFSFEVLERIWRGRVQNLEKLQESELVTDELRKCWDDVEAAVWDLDLRYRLLESTKRKDALRLVEAYLEEAMMGNDDEPSFLELAARREKELEE NAKYRHDENEKDADIRQDLGAEGGMKNGLEQVPDDDRQPVSVSSPAAETKKGYRRVKCIPSRKHPTRKGRSTGNIPSSKYDTLSTPEVKLVKDALQSSSI ELQAVVKDPLPDALYRSEPVIAGPRQNICNKEALVEDHNGKNLDASDPSVDAIMSELNSEGLNPDVHVEQSNGIDEDGSTPSNTLDPGRMRTDERNKAIC SSERLRVSKPSLMARNITASAHEWDDSLGSSSEGTSNGTRRNKIKRPKIELPPSTKDDSTHNSPRRKKRRWSAEEEDALREGVYAFGKGNWKDILNSRRD IFAGRSSVDLKDKWRNMMS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15720	MYB	TRFL5	TRF-like 5 (.1)		Lus10024200 [exp]	0	1
AT2G22650			FAD-dependent oxidoreductase f...		Lus10036320 [exp]	4.7	0.8488
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	6.7	0.8356
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	7.9	0.8475
AT3G09250			Nuclear transport factor 2 (NT...		Lus10021504 [exp]	7.9	0.8436
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	9.8	0.8428
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Lus10039118 [exp]	12.4	0.8112
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	13.0	0.8282
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	14.1	0.8132
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	19.4	0.8215
AT4G27340			Met-10+ like family protein (....		Lus10037871 [exp]	19.6	0.7868

Compare expression of checked genes

Lus10024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.