Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47600 262 / 1e-86 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT3G28910 254 / 1e-83 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT5G62470 254 / 5e-83 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT1G74650 252 / 1e-82 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT1G08810 225 / 1e-72 MYB ATMYB60 myb domain protein 60 (.1.2) AT5G15310 177 / 9e-54 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G23250 173 / 1e-52 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 172 / 2e-52 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G01140 175 / 4e-52 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G02940 173 / 6e-52 MYB ATMYB107 myb domain protein 107 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002056 [exp] 380 / 6e-133 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10042200 [exp] 281 / 2e-93 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10008616 [exp] 268 / 9e-88 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10015369 [exp] 238 / 3e-77 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10005245 [exp] 227 / 5e-73 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10030677 [exp] 226 / 9e-73 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10009522 [exp] 224 / 6e-72 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10020343 [exp] 223 / 2e-71 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10033003 [exp] 176 / 3e-52 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126700 [exp] 264 / 5e-87 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.017G082500 [exp] 258 / 4e-85 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.013G067500 [exp] 229 / 1e-73 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 228 / 3e-73 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.017G086300 [exp] 179 / 1e-53 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.019G118200 [exp] 177 / 4e-53 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.002G157600 [exp] 175 / 8e-53 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G018200 [exp] 171 / 2e-52 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.013G148600 [exp] 174 / 5e-52 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 174 / 9e-52 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024218 pacid=23175794 polypeptide=Lus10024218 locus=Lus10024218.g ID=Lus10024218.BGIv1.0 annot-version=v1.0 ATGGGAAGACCACCTTGCTGTGAGAAAGCAGGGGTGAAAAAGGGACCATGGACTCCAGAGGAAGACATCATCTTGGTCTCTTACATTCAAGAACACGGCC CCGGCAATTGGCGCTCCGTTCCCACCCACACCGGACTGATGAGATGCAGTAAGAGCTGCCGGCTGAGGTGGACGAACTACCTCCGACCAGGGATAAAGCG TGGTAATTTCACACAAGAAGAAGAGAAGATGATAATCCACCTCCAAGCCCTCCTCGGAAACCGATGGGCCGCCATAGCATCCTACCTCCCTGAAAGAACC GACAACGACATCAAGAACTACTGGAACACCCACCTCAAGAAAAAGCTCAACAACAACAAAAATTATCATCATCATCATCATTCCACTTCATCTTCTTCCG ATTCCAATAGAGGAAAGTGGGAGAGGCGCCTCCAGACAGATATCGGTCTAGCCAAACAAGCCCTCTCCGACGCCCTCTCTCTCCACTCTAAAAAACCCAC CACCACGGAGGAGGAGAAGTCCAAATTACCCTTGGACAATCCTCCAAATTACGCATCCAGCACCGACAACATAGCCAGGCTTCTCCAGAACTGGATCAAG AAGCCGCCGACAAAGGTTCCGATCGCTCCAGCAGAGATGAAGTCGGATGTGACTCAGAACTCGGTGAGTTCGAGTAGTGGTGATGATAACGATAATTTTG AGTTGCTGTTTGGGTTCCATAATAATAGCTCGCCCAACTCAGAAGGTGGGTCCCAGTCGGTTGACGAGGAGGGCATAATAATAATGGATGAGAGGAAGCC CGTTCGTGTTGAGGATCATGGGGTTTCTTCATGGGGTTCCCCCCCCGACGCTCTCGCTGCTGGAGAAATGGCTCTTTGA
AA sequence Show only first row Show all	>Lus10024218 pacid=23175794 polypeptide=Lus10024218 locus=Lus10024218.g ID=Lus10024218.BGIv1.0 annot-version=v1.0 MGRPPCCEKAGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGLMRCSKSCRLRWTNYLRPGIKRGNFTQEEEKMIIHLQALLGNRWAAIASYLPERT DNDIKNYWNTHLKKKLNNNKNYHHHHHSTSSSSDSNRGKWERRLQTDIGLAKQALSDALSLHSKKPTTTEEEKSKLPLDNPPNYASSTDNIARLLQNWIK KPPTKVPIAPAEMKSDVTQNSVSSSSGDDNDNFELLFGFHNNSSPNSEGGSQSVDEEGIIIMDERKPVRVEDHGVSSWGSPPDALAAGEMAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	0	1
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10021389 [exp]	1.0	0.8766
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016495 [exp]	5.2	0.8474
					Lus10029087 [exp]	5.3	0.8628
					Lus10014008 [exp]	7.7	0.8454
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	8.1	0.8431
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	8.2	0.8455
AT1G15410			aspartate-glutamate racemase f...		Lus10030057 [exp]	9.6	0.7677
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10028317 [exp]	13.0	0.7684
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	13.3	0.8338
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	15.9	0.7823

Compare expression of checked genes

Lus10024218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.