Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 173 / 3e-47 GRAS RGL2 RGA-like 2 (.1) AT5G17490 163 / 8e-44 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 159 / 6e-42 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 157 / 8e-42 GRAS RGL1 RGA-like 1 (.1) AT1G14920 148 / 2e-38 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT4G17230 127 / 5e-31 GRAS SCL13 SCARECROW-like 13 (.1) AT3G50650 124 / 5e-30 GRAS SCL7 GRAS family transcription factor (.1) AT5G59450 120 / 1e-28 GRAS SCL11 GRAS family transcription factor (.1) AT1G50600 119 / 2e-28 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 118 / 2e-28 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023621 [exp] 981 / 0 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10016889 [exp] 451 / 2e-154 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10037754 [exp] 368 / 1e-124 AT1G66350 156 / 2e-43 RGA-like 1 (.1) Lus10037753 [exp] 311 / 1e-99 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10037758 [exp] 296 / 3e-93 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10036459 [exp] 294 / 7e-93 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10041128 [exp] 291 / 3e-92 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10016897 [exp] 288 / 5e-90 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 276 / 2e-85 AT3G03450 175 / 1e-47 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 354 / 7e-116 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 333 / 3e-107 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 313 / 4e-100 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 277 / 5e-87 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 263 / 1e-80 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 249 / 1e-76 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 234 / 7e-70 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.004G089800 [exp] 154 / 4e-40 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 154 / 5e-40 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.012G020200 [exp] 150 / 7e-40 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10024252 pacid=23175769 polypeptide=Lus10024252 locus=Lus10024252.g ID=Lus10024252.BGIv1.0 annot-version=v1.0 ATGGATCAATTCTCCAAGTCAACTCCTGATTTCAACTACGTTGACCACGATCAATGGCTCCGATTACAGTTCTCGCCGTCCTTCCCGCTTTTGGATCATC ACGAAATGGACGACGGATATTTTTCAAGTCAGCGCCGCTCTAATTTTGACCTGCTTCACAAATATGGATTCCAGCCTGTCACCGAATCCGTCCCTCCTCC TCAAGAGAAATCAACAGCCGCACTTATTGAACAATTAGAAGAAGAAGAAGAAGAGATGAATGAAGTGCCGTTGTCGGCGGAGGAAGTCGTCAGAATCGCC GGGATGAGAATCGTACAGCACTCCTCGAGGAAAGCCGGATCTCCGTCGATGCTCCAGATTCCATTCGATCCTTCACTCTCGTACCTTTCCCACCAGGACT TGAAGAACGTGGAGCTCGCCGAGTACCTCCTAGCCGCCGCCGAGAGAGTCGGCGACAAGCAGTTCCCCCACGCCGCCGCCTTGCTCAACCTCTGCGACGC CTTGTCTTCCAAGACCGGAAACCCCGTTCAACGATTGGGCCACTGCTTCTCCCGAGCACTACGCGACAGGATATCTCGCGATATGGGCCGAGGAGAAGTT GATAATAAGCCCAACTCGCCACCTGACCCGCATGACTCAATGCTCACTACTACGGAGTTCGCCATCCAAGGAATGGAACGCGGCGAAATGCCAATGTTCC AGGTCCCACATTTGGTCGGGATTCAAGCTATATTAGAAAACGTGACCACTTCCAATAAGATCCACGTCATCGATCTCAGGATCAGGAACGGTCAGCATTG GGTTGCATTGATCCAAGGTCTAGTGTCTCGCCGGTCAGACCCAACCAATCCCCAACCGGTCGAGCTACTTCGAATCACAGCGGTCGAGACATCTTCCGAT GAATGTTCGTCTTCGATCCGGGAGACCGGGTGCCGGCTTTCGGACTTTGCTAAAGCCATGAGCATACCATTTCGGTTCGAGATTGTGGTTATGGAAGACA ACCGGTGGATTGGTTTCAAACCTGACCGGTTCGGGTTGAACTGGGATGAAGAGTCGCTAGTGGTGTATTCAGAATGGGGTTTGAGGAGGTTACTCACGAG GCCACGAGAGGCGGAAAGAGTGGTGAAGACGTTGAAACAAATGAAGCCGCGGGTGATGATCACAGTGGAGGTGGAAGCGAACCTCAACTCCCCGAATTTT TCGGCGAGGTTTGTGGAGGCGTTGTTTCACTATAGCGCGGTGTTTGAGAACGTAGAATGTTGCAATCCGAGTAGAGATTGTCCTAACAGAGAGACGATCG AGACGGTGTACTTGGGGGACCAGATAAGTAACATATTGGCAACGGAAGGGGATGAGAGGTACTTGAGGAGCGTGAAGATTGAAGTATGGAGGAAGTTCTT CAAGCAGTTTGGGATGGAGGAGATAGAGCCGAGTGAGGCAGCAATGCATCAGGCTAAGTTATTCATGGAGAAATACGTGAGCGAGCAGCATTATACAATC GGCATGGATGGGAAAAGCATGGTTCTGGGGTTTAAAACTACGGCTATGATTTGTGTGTCTACTTGGAAGTTTGTTCAATTGGCCAGGCTAGCTAGTACTA AGCGGGATTTGAGGGTTGAGTTCTACTAG
AA sequence Show only first row Show all	>Lus10024252 pacid=23175769 polypeptide=Lus10024252 locus=Lus10024252.g ID=Lus10024252.BGIv1.0 annot-version=v1.0 MDQFSKSTPDFNYVDHDQWLRLQFSPSFPLLDHHEMDDGYFSSQRRSNFDLLHKYGFQPVTESVPPPQEKSTAALIEQLEEEEEEMNEVPLSAEEVVRIA GMRIVQHSSRKAGSPSMLQIPFDPSLSYLSHQDLKNVELAEYLLAAAERVGDKQFPHAAALLNLCDALSSKTGNPVQRLGHCFSRALRDRISRDMGRGEV DNKPNSPPDPHDSMLTTTEFAIQGMERGEMPMFQVPHLVGIQAILENVTTSNKIHVIDLRIRNGQHWVALIQGLVSRRSDPTNPQPVELLRITAVETSSD ECSSSIRETGCRLSDFAKAMSIPFRFEIVVMEDNRWIGFKPDRFGLNWDEESLVVYSEWGLRRLLTRPREAERVVKTLKQMKPRVMITVEVEANLNSPNF SARFVEALFHYSAVFENVECCNPSRDCPNRETIETVYLGDQISNILATEGDERYLRSVKIEVWRKFFKQFGMEEIEPSEAAMHQAKLFMEKYVSEQHYTI GMDGKSMVLGFKTTAMICVSTWKFVQLARLASTKRDLRVEFY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10024252 [exp]	0	1
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	8.8	0.6818
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	14.7	0.6495
					Lus10038978 [exp]	29.2	0.6695
AT1G19880			Regulator of chromosome conden...		Lus10010614 [exp]	37.1	0.5788
AT1G11060			WAPL (Wings apart-like protein...		Lus10011196 [exp]	41.8	0.6264
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024144 [exp]	45.8	0.5970
AT5G28646		WVD2	WAVE-DAMPENED 2, TPX2 (targeti...		Lus10000016 [exp]	49.8	0.5841
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10041456 [exp]	52.3	0.6126
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029377 [exp]	62.1	0.6301
AT5G04550			Protein of unknown function (D...		Lus10002840 [exp]	78.4	0.5784

Compare expression of checked genes

Lus10024252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.