Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50940 429 / 3e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 414 / 1e-139 BCS1 cytochrome BC1 synthesis (.1) AT2G18193 375 / 3e-125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18190 361 / 5e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 352 / 2e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17730 350 / 6e-116 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17740 350 / 3e-115 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 315 / 1e-101 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 311 / 1e-100 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28610 305 / 2e-98 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007391 [exp] 931 / 0 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014284 [exp] 397 / 5e-134 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 394 / 7e-133 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 390 / 2e-131 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1) Lus10003213 [exp] 352 / 4e-116 AT5G17740 430 / 7e-146 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 340 / 4e-113 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 344 / 4e-112 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1) Lus10014496 [exp] 331 / 6e-108 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 319 / 4e-103 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G032700 [exp] 536 / 0 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.007G020900 [exp] 427 / 8e-146 AT3G50930 561 / 0.0 cytochrome BC1 synthesis (.1) Potri.005G119900 [exp] 415 / 5e-141 AT5G17760 512 / 3e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020600 [exp] 400 / 4e-135 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G177200 [exp] 397 / 4e-134 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020800 [exp] 392 / 6e-132 AT5G17760 506 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G020500 [exp] 389 / 1e-131 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G119132 [exp] 380 / 1e-126 AT3G50930 484 / 3e-166 cytochrome BC1 synthesis (.1) Potri.009G119066 [exp] 363 / 3e-120 AT3G50930 471 / 4e-161 cytochrome BC1 synthesis (.1) Potri.010G057900 [exp] 352 / 3e-117 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10024275 pacid=23174952 polypeptide=Lus10024275 locus=Lus10024275.g ID=Lus10024275.BGIv1.0 annot-version=v1.0 ATGTGGTCCCTACCCAATACCATCACCTTCCCTACCCTCCGCCTCCCGCCGCTCTCCGAAGCACAGCTCCTCTTCTCCACCGCCGCATCCCTCGCCGGCT CCGCCCTCCTCTTCCGTTCCACCGTCTACAATCTCCTCCCCGACACTCTCAGCGACTACCTCTCCTCCCGCCTCAAGCGCGTCACTACTGGCATCTCCTC CAACCTCACCGTCGTAATCCACGAATCCGATGGCCTCACACCCAACCAGATGTTCGCCGCCGCCAACCTCTACCTGGCCGCCAAGCTATCTCAATCCACC GCCAGGATCAAGGTCAACAAGCTCGAGAAGGAGAAGGCGCTTGACGTCACCATCGATCGCAACGAGGAACTCGTCGATTCCTTCAGAGGAGCTAAGATGA AATGGAGCCTCTGCTCAGCTCTTGTTTCCTCAAACTCCATCCCATATTCTTCTCGCGGGGGAAGCGGAATCCAAACCGCGTTCGTCAGACCGGAGGTCCA TCACTTCGAGCTCACCTTCCACAAGAAGCACCGCAAGCTGGTCCTTGGGACCTACCTGCCTCACATCTTGGCGGAGGCCAAATCGATTAGGGAGGCCAAT AAGACGGTGAAACTTCACACCATTGATTACAACGGGGTCGACTACTGGGGATCCATCGTGTTCGACCATCCGGCCACGTTCGAGACAATCACCATGGATC CAGAGACGAAGAAGGCGCTGGTCACAGATCTGGATACGTTCGTCGAGCGGAAGGATTTCTACAGGAAGGTAGGCAAAGCGTGGAAGCGCGGATACTTGTT GCACGGACCTCCTGGGACTGGGAAATCAAGCTTGGTCGCCGCCATGGCTAATTACCTCAAGTTTGACATCTACGACCTCGATTTAAAAGAGGTACAATGC AATTCCGATCTGCGGAGGTTGCTAATTGGCACCGGCAACAGATCTATAGTGGTACTCGAGGACATTGATAGAACTTTCGCCGCTATCGATCAGACAGAGA AGGTAAAACGGAGTCCAGGATTAATTTCGAATTTTAGACATAAAAACCTGCAGGTTACACTGGCGGGGCTTCTGAACTTTGTGGACGGATTATGGTCGAC GTGCGGGGAAGAGAGGATATTAGTGTTCACGACGAATAACAAGGAGGATCTGGATCCGGCATTGCTGAGGCCAGGAAGGATTGACGTGGAGATGCACATG TCCTACTGCTCATTCACTGCGTTCAAGACTCTAGCGTACAATTACTTTGAGGAGACGGAGCATGAGCTGTTCGGGCAGATCAAGGAGCTGCTGCAGGATG TTGATGCTACTCCTGCTGAGATTGCAGGTGAGTTGCTCAAGAGCAAGAACGTTGATGTTGCGCTGCATGGTGTCGTGAAGCTGCTGAGGAGCAAGGAGTC TGTAGGTGCTGCTGCCGAAACTAGAACTGGGGTGCCATTGGCTATAGGGACGGCGGCATCAGAGAATGTGGTGGAGAGGAACAGCTGGGGTGGTGCTTTT CATTACAATGGCTACGAATAG
AA sequence Show only first row Show all	>Lus10024275 pacid=23174952 polypeptide=Lus10024275 locus=Lus10024275.g ID=Lus10024275.BGIv1.0 annot-version=v1.0 MWSLPNTITFPTLRLPPLSEAQLLFSTAASLAGSALLFRSTVYNLLPDTLSDYLSSRLKRVTTGISSNLTVVIHESDGLTPNQMFAAANLYLAAKLSQST ARIKVNKLEKEKALDVTIDRNEELVDSFRGAKMKWSLCSALVSSNSIPYSSRGGSGIQTAFVRPEVHHFELTFHKKHRKLVLGTYLPHILAEAKSIREAN KTVKLHTIDYNGVDYWGSIVFDHPATFETITMDPETKKALVTDLDTFVERKDFYRKVGKAWKRGYLLHGPPGTGKSSLVAAMANYLKFDIYDLDLKEVQC NSDLRRLLIGTGNRSIVVLEDIDRTFAAIDQTEKVKRSPGLISNFRHKNLQVTLAGLLNFVDGLWSTCGEERILVFTTNNKEDLDPALLRPGRIDVEMHM SYCSFTAFKTLAYNYFEETEHELFGQIKELLQDVDATPAEIAGELLKSKNVDVALHGVVKLLRSKESVGAAAETRTGVPLAIGTAASENVVERNSWGGAF HYNGYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50940			P-loop containing nucleoside t...		Lus10024275 [exp]	0	1
AT5G62580			ARM repeat superfamily protein...		Lus10036647 [exp]	11.8	0.8701
AT5G54370			Late embryogenesis abundant (L...		Lus10020169 [exp]	13.6	0.8793
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10030690 [exp]	15.6	0.8665
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	16.6	0.8668
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032156 [exp]	28.0	0.8135
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	29.5	0.8615
AT1G01910			P-loop containing nucleoside t...		Lus10041377 [exp]	29.5	0.8518
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	34.2	0.8665
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	44.5	0.8608
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	46.7	0.8400

Compare expression of checked genes

Lus10024275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.