Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75490 131 / 1e-37 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 122 / 3e-33 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT2G40350 107 / 5e-29 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT2G40340 108 / 2e-27 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT3G57600 101 / 2e-25 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT2G38340 92 / 3e-22 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT5G05410 89 / 1e-20 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT2G40220 79 / 9e-17 AP2_ERF ATABI4, GIN6, SUN6, SIS5, SAN5, ISI3, ABI4 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) AT3G11020 76 / 7e-16 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT2G33710 69 / 7e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006127 [exp] 334 / 2e-116 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 138 / 4e-40 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 115 / 2e-31 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 102 / 2e-25 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10012226 [exp] 99 / 3e-24 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 98 / 4e-24 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 97 / 2e-23 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 92 / 2e-21 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 91 / 2e-21 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G233300 [exp] 140 / 9e-41 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 139 / 4e-40 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 105 / 1e-26 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 104 / 1e-26 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 94 / 2e-22 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.008G073600 [exp] 92 / 1e-21 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.008G071100 [exp] 79 / 1e-16 AT2G40220 135 / 7e-37 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Potri.010G186400 [exp] 78 / 2e-16 AT2G40220 102 / 2e-24 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Potri.006G104200 [exp] 77 / 8e-16 AT2G38340 91 / 1e-20 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.016G126100 [exp] 75 / 3e-15 AT2G38340 96 / 4e-22 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10024298 pacid=23174950 polypeptide=Lus10024298 locus=Lus10024298.g ID=Lus10024298.BGIv1.0 annot-version=v1.0 ATGCCCAACGCCACGTCATCATCAACATCCGACCACTGCCCAAAACCTCGGGCGAGCAGTGGCAGCTCAAGGAAAGGGTGTATGCGTGGCAAAGGCGGCC CCGAGAACGCCCTCTGCACCTACAAAGGTGTCCGACAGCGTACTTGGGGCAAATGGGTCGCCGAGATCCGCGAGCCCAACCGCGGGGCCCGCCTCTGGCT CGGCACCTTCGACACCTCCCACGACGCCGCCTTAGCCTACGACGCCGCCGCTCGTAAGCTCTACGGGCCCGACGCCAAACTCAATTTGCCCCACTTCCAC AACTCCCCCAACAATACCAATCATAATAATATCGTCCCCCACGTGGATGTACACGTGCCTCTATCACTTATTTCCTCTGGTGGTCCCACCCTTTCTCCTT CTTTCACCTCTTCCTCCTCCTCCAATAATGGTCCCACTTTCACATCCAATAATGCTGACGTGGGCTACCGTGGGTTTGACCTGCCGTTACACGGTGGTGA TGGTGGTCAGTGGGTGGATCACTACTCGAGTTCCGACTGGAAGAACACCGACTCATCAGCAGCTGCAGCAGCAGCGGACGCCAGTTGTAATTATAATTAC AAGGTAGGAGGAAACGAGGTGTGGTCTAATTTGAACGCCAATTTGCCCTTGATGGACGACTCCATTTGGGTGGAGGCCGCCATGTCTTTGGACTACTTTC AGGTGGCGGCGATGCAGGATTCTAACGGCTGGGATACGGCGGCGCTTCCGCCGTCCAATACCACCCCCTGGTGCATCTAA
AA sequence Show only first row Show all	>Lus10024298 pacid=23174950 polypeptide=Lus10024298 locus=Lus10024298.g ID=Lus10024298.BGIv1.0 annot-version=v1.0 MPNATSSSTSDHCPKPRASSGSSRKGCMRGKGGPENALCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAALAYDAAARKLYGPDAKLNLPHFH NSPNNTNHNNIVPHVDVHVPLSLISSGGPTLSPSFTSSSSSNNGPTFTSNNADVGYRGFDLPLHGGDGGQWVDHYSSSDWKNTDSSAAAAAADASCNYNY KVGGNEVWSNLNANLPLMDDSIWVEAAMSLDYFQVAAMQDSNGWDTAALPPSNTTPWCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10024298 [exp]	0	1
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	9.1	0.7995
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	10.4	0.7249
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	11.5	0.7725
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	14.4	0.7917
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	17.9	0.7684
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10040606 [exp]	24.5	0.7129
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	35.5	0.7340
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	36.9	0.7309
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	40.2	0.7279
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	40.6	0.7095

Compare expression of checked genes

Lus10024298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.